Sequence
atgc intronic sequence ATGC exonic sequencegtgctcttattggttattggatcgctgtgtgtaatttgtttctttccctttgagagcctttctagtttcttgggcagGCTCTTGAGCTACCAAGCATGTCAGATTCAAATGTGAAGTGGATTGATGGGCTCCAGTTCACATCATTGTACTGGCCTCCACCCCTCGATGCGGAGCAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G107101_T05 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g08700.3 (Oryza sativa), 3'ss of exon 2
gtgctcttattggttattggatcgctgtgtgtaatttgtttctttccctttgagagcctttctagtttcttgggcagGCTCTTGAGCTACCAAGCATGTCAGATTCAAATGTGAAGTGGATTGATGGGCTCCAGTTCACATCATTGTACTGGCCTCCACCCCTCGATGCGGAGCAGA
||||| |||||| | | |||| | | |||||| ||| |||||||| |||||||| | ||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||| ||| |||||| ||||| | ||| | | || |
gtgcttttattgctaactggagcagtttgtgtagtttctttctttctctttgagaattctctcagtttcttgggcagGCTCTTGAGCTACCAAGTATGTCAGCTTCAAATGAGAAGTGGATTGATGGGCTCCAGTTCTCATCACTGTTCTGGCCCCCACCACAGGATTCACAACAAA
upper sequence: GRMZM2G107101_T05 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g08700.4 (Oryza sativa), 3'ss of exon 2
gtgctcttattggttattggatcgctgtgtgtaatttgtttctttccctttgagagcctttctagtttcttgggcagGCTCTTGAGCTACCAAGCATGTCAGATTCAAATGTGAAGTGGATTGATGGGCTCCAGTTCACATCATTGTACTGGCCTCCACCCCTCGATGCGGAGCAGA
||||| |||||| | | |||| | | |||||| ||| |||||||| |||||||| | ||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||| ||| |||||| ||||| | |
gtgcttttattgctaactggagcagtttgtgtagtttctttctttctctttgagaattctctcagTTTCTTGGGCAGGCTCTTGAGCTACCAAGTATGTCAGCTTCAAATGAGAAGTGGATTGATGGGCTCCAGTTCTCATCACTGTTCTGGCCCCCACCACAGG------------
upper sequence: GRMZM2G107101_T05 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g08700.5 (Oryza sativa), 3'ss of exon 2
-----------------------------------------------------------------------------------gtgctcttattggttattggatcgctgtgtgtaatttgtttctttccctttgagagcctttctagtttcttgggcagGCTCTTGAGCTACCAAGCATGTCAGATTCAAATGTGAAGTGGATTGATGGGCTCCAGTTCACATCATTGTACTGGCCTCCACCCCTCGATGCGGAGCAGA
||||| |||||| | | |||| | | |||||| ||| |||||||| |||||||| | ||||||||||||||||||||||||||||||| |||||
gcaagtagcttataagaagatttggactttggtggcataaatggatgaactaactggcggcttcaacgtggtgttgattacagGTGCTTTTATTGCTAACTGGAGCAGTTTGTGTAGTTTCTTTCTTTCTCTTTGAGAATTCTCTCAGTTTCTTGGGCAGGCTCTTGAGCTACCAAGTATGTC-----------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|149079265|gb|EE168237.2|EE168237EST: GGCATAGATGGATGAACTGATTGTCAACTTCAACAAGTTGTTGATTACAG GCTCTTGAGCTACCAAGCATGTCAGATTCAAATGTGAAGTGGATTGATGGG
genomic: GGCATAGATGGATGAACTGATTGTCAACTTCAACAAGTTGTTGATTACAGgtgctcttat ... tcttgggcagGCTCTTGAGCTACCAAGCATGTCAGATTCAAATGTGAAGTGGATTGATGGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgctgtgtgtaatttgtttctttccctttgagagcctttctagtttcttgggcagGCTCTTGAGCTACCAAGCATGTCAGATTCAAATGTGAAGTGGATTGATGGGCTCCAGTTCACATCATTGTACTGGCCTCCACCCCTCGATGCGGAGCAGA
cctttctagtttctt CT-rich tract
taatttgtttcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgctcttattggttattggatcgctgtgtgtaatttgtttctttccctttgagagcctttctagtttcttgggcagGCTCTTGAGCTACCAAGCATGTCAGATTCAAATGTGAAGTGGATTGATGGGCTCCAGTTCACATCATTGTACTGGCCTCCACCCCTCGATGCGGAGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG