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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagtagttgcttgtgtgaaaaataacctgtcctccagacatgctacatgagttgattttgtgtcatgtgatccattaatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCATTTGTGCCACATGATCAAGAGTACTACCTTTCGATTGTCTCAGAGAGGT

Basic information

species Zea mays
transcript GRMZM2G107082_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107082_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os11g47330.1 (Oryza sativa), 3'ss of exon 2
--------gtatagtagttgcttgtgtgaaaaataacctgtcctccagacatgctacatgagttgattttgtgtcatgtgatccattaatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCATTTGTGCCACATGATCAAGAGTACTACCTTTCGATTGTCTCAGAGAGGT
         | | |   | || | |   |||  | || | | |||    |  |||  || | || | ||   ||  |||  |    |   | ||||||| ||||||||||||||||||||||||||||| |||||||| || ||||||||||| || ||||||||||| ||||||||||| |||||||| |||||| 
gtagttcaattttgctatcgccttta--aaatctgacttattctctgttc--gcttgataaattaagtt---gttctgtcctattgtggctattcagGTCGAGATGGGTGGCTGCAAGGCTCCAATCACCACCTTCATTGTGGAGCCATTTGTACCCCATGATCAAGAATACTACCTTTCTATTGTCTCGGAGAGGC

upper sequence: GRMZM2G107082_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT1G09430.1 (Arabidopsis thaliana), 3'ss of exon 2
gtatagtagttgcttgtgtgaaaaataacctgtcctccagacatgctacatgagttgattttgtgtcatgtgatccattaatt--tttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCATTTGTGCCACATGATCAAGAGTACTACCTTTCGATTGTCTCAGAGAGGT
        ||  ||  |         | || |   |  |||   |||     | ||  || || ||  ||   |   || ||   |  ||||| |||||||  || || || || || ||||| || ||||| || ||||| |||||||| ||||||||||| |||||||| || || || || || ||  
--------gtgactcat------cgcagccagagttatagatcagctggtaaattttgttgtg-gtattgatgtttgtttatgagtcgcagGTCGAGATGGAGGGATGTAAAGCACCTATCACTACATTCATTGTGGAGCCTTTTGTGCCTCATGATCAAGAATACTACCTCTCTATAGTATCTGATAGAC

upper sequence: GRMZM2G107082_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv14s0060g00550.t01 (Vitis vinifera), 3'ss of exon 2
gtatagtagttgcttgtgtgaaaaataacctgtcctccagacatgctacatgagttgattttg--tgtcatgtgatccattaatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCATTTGTGCCACATGATCAAGAGTACTACCTTTCGATTGTCTCAGAGAGGT
               |||   ||   | |   |   |||||  |    ||  | || ||||    |  |||||||         | || |||||||||||||||| |||||||| ||||| || || || || || || || ||||| || ||||| |||||||| |||||||||||||| || || ||| 
---------------gtgatgaatgcatcaaatttaccagaattttggcactaattcatttctgttaacatgtgaattggattctctttagGTTGAGATGGGTGGTTGCAAGGCACCAATAACCACTTTTATTGTTGAACCGTTTGTTCCCCATGACCAAGAGTATTACCTTTCGATTGTATCTGATAGGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32839448|gb|CD979129.1|CD979129
EST:     TGGATTTCGATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|211123623|gb|FL002522.1|FL002522
EST:     TGGATTTCGATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|211124407|gb|FL002541.1|FL002541
EST:     TGGATTTCGATCAAGTCAAGGAGTTTGTCAAGGASCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|211124411|gb|FL002545.1|FL002545
EST:     TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|18166374|gb|BM336213.1|BM336213
EST:     TGGATTTCGATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|211125183|gb|FL002551.1|FL002551
EST:     TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAG-CTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|211122850|gb|FL002518.1|FL002518
EST:     TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|28986581|gb|CB351207.1|CB351207
EST:     TGGATTTCGATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|89759015|gb|DY687974.1|DY687974
EST:     TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|211125187|gb|FL002555.1|FL002555
EST:     TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|21843321|gb|BQ703902.1|BQ703902
EST:     TGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|211124415|gb|FL002549.1|FL002549
EST:     TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|116817285|gb|EC860108.1|EC860108
EST:     TGGATTTCGATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|211122848|gb|FL002516.1|FL002516
EST:     TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|211124408|gb|FL002542.1|FL002542
EST:     TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|211124410|gb|FL002544.1|FL002544
EST:     TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|211123627|gb|FL002526.1|FL002526
EST:     TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|211124413|gb|FL002547.1|FL002547
EST:     TGGATTYCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGHTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|148996106|gb|EE035369.2|EE035369
EST:     TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|211124403|gb|FL002537.1|FL002537
EST:     TGGATTTCGATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|71769087|gb|DR967024.1|DR967024
EST:     TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|32937837|gb|CF042656.1|CF042656
EST:     TGGATTTCGATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|211123625|gb|FL002524.1|FL002524
EST:     TGGATTTCGATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|211123630|gb|FL002529.1|FL002529
EST:     TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|211123633|gb|FL002532.1|FL002532
EST:     TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|211122849|gb|FL002517.1|FL002517
EST:     TGGATTTCGATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|211124409|gb|FL002543.1|FL002543
EST:     TGGATTTCGATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTRAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|32936859|gb|CF041678.1|CF041678
EST:     TGGATTTCGATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|211124406|gb|FL002540.1|FL002540
EST:     TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|211123634|gb|FL002533.1|FL002533
EST:     TGGATTTCGATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|211123631|gb|FL002530.1|FL002530
EST:     TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|211122852|gb|FL002520.1|FL002520
EST:     TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|211124416|gb|FL002550.1|FL002550
EST:     TGGATTTCGATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|32838105|gb|CD977783.1|CD977783
EST:     GGATTTCGATCAAGTCAAGGAGTTTGTCAAGAA-CAGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: GGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGC-GGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|88748061|gb|DY532202.1|DY532202
EST:     TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGATATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|89758437|gb|DY687616.1|DY687616
EST:     TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|32836591|gb|CD976269.1|CD976269
EST:     TGGATTTCGATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|211123628|gb|FL002527.1|FL002527
EST:     TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|211125185|gb|FL002553.1|FL002553
EST:     TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|6022461|gb|AW067494.1|AW067494
EST:     TGGATTTCGATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|148953532|gb|EE153041.2|EE153041
EST:     TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|211125184|gb|FL002552.1|FL002552
EST:     TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|211124404|gb|FL002538.1|FL002538
EST:     TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|211123635|gb|FL002534.1|FL002534
EST:     TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|211125189|gb|FL002557.1|FL002557
EST:     TGGATTTCGATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|148941766|gb|EC886727.2|EC886727
EST:     TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|211125188|gb|FL002556.1|FL002556
EST:     TGGATTTCGATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
EST: gi|211122851|gb|FL002519.1|FL002519
EST:     TGGATTTCGATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAG                         GTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA
genomic: TGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 366

TGATATGCTGTTCGGGAAGCGTGGGAAGAGCGGCCTCGTGGCTCTCAACTTGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCATTTGTGCCACATGATCAAGAGTACTACCTTTCGATTGTCTCAGAGAGGT


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 581

TGATATGCTGTTCGGGAAGCGTGGGAAGAGCGGCCTCGTGGCTCTCAACTTGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCATTTGTGCCACATGATCAAGAGTACTACCTTTCGATTGTCTCAGAGAGGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 424

TGATATGCTGTTCGGGAAGCGTGGGAAGAGCGGCCTCGTGGCTCTCAACTTGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCATTTGTGCCACATGATCAAGAGTACTACCTTTCGATTGTCTCAGAGAGGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1662

TGATATGCTGTTCGGGAAGCGTGGGAAGAGCGGCCTCGTGGCTCTCAACTTGGATTTCAATCAAGTCAAGGAGTTTGTCAAGGAGCGGCTGGGGGTTGAGgtatagtagt ... aatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCATTTGTGCCACATGATCAAGAGTACTACCTTTCGATTGTCTCAGAGAGGT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctccagacatgctacatgagttgattttgtgtcatgtgatccattaatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCATTTGTGCCACATGATCAAGAGTACTACCTTTCGATTGTCTCAGAGAGGT
                                         cattaat  putative branch site (score: 1662)
                                               tttttc  CT-rich tract
                                      atccattaattttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatagtagttgcttgtgtgaaaaataacctgtcctccagacatgctacatgagttgattttgtgtcatgtgatccattaatttttcagGTTGAGATGGGTGGCTGCAAGGCTCCAATCACGACCTTCATCGTCGAGCCATTTGTGCCACATGATCAAGAGTACTACCTTTCGATTGTCTCAGAGAGGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG