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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actttggctcaactggatcttagtcttcactgttcattcaatagctaggtttgctgacattttgaggacaatatttctaacacaatttaccattttaaagGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAATATGTTGGTACAGGGCATGCTGATTTGTCTAGATT

Basic information

species Zea mays
transcript GRMZM2G106574_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G106574_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os08g34480.1 (Oryza sativa), 3'ss of exon 2
actttggctcaactggatcttagtcttcactgttcattcaa---tagctaggtttgctgacattttgaggacaatatttctaacacaatttaccat-tttaaagGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAATATGTTGGTACAGGGCATGCTGATTTGTCTAGATT
   ||   |||  |  |   |  | | | || |||| | ||   | |  |  |    |   |||||||  |  || ||  ||  | || | | | | ||||||||||||||| || ||||||||||| ||||| ||||||||||||||||| |||||||| || |||||||||||||| |||  | ||||
---tttattcagtttaaatatgttgtac-cttttcaatgaactttggtaatatccttttgtattttgaccatgatgttgatatgataaatcatcttctttaaagGCTAGCGACAGGTTCAACATAAATTCTCAACTTGAGCATCTTCAAGCGAAATATGTGGGCACAGGGCATGCTGACTTGAATCGATT

upper sequence: GRMZM2G106574_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA08G40200.2 (Glycine max), 3'ss of exon 1
---------------------------------------------------------------------------actttggctcaactggat----cttagtct-tcactgttcattcaat---agctaggtttgctgacattttgaggacaatatttctaacacaatttac-cattttaaa--gGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAATATGTTGGTACAGGGCATGCTGATTTGTCTAGATT
                                                                            ||  |  |||| |   |     | ||| | ||| | |     | ||   |  | |  ||  | |   |||    |     |  | ||   | |||   | ||||| |  ||| || ||||| || ||||| || || |||||||||||||| ||||||||||||||||| || || ||||| ||||||   |||||
gtagagattctattcccaatttccttgaaacgctctttccctctttccgttcactcgctccgttatgaagttcaggctgcgattcaattttgtacttttcagtttctcaatctgtgacctatgtgaattggagttaattagggttttcaaattcggtcccgaattgagtttgtgcgttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATT

upper sequence: GRMZM2G106574_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA18G17590.1 (Glycine max), 3'ss of exon 1
--------------------------------------------------------------------------------------actttggctcaactggatcttagtct-tcactgttcattcaat---agctag-gtttgctgacattttgaggacaatatttctaacacaatttaccattttaa---agGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAATATGTTGGTACAGGGCATGCTGATTTGTCTAGATT
                                                                                        |     |    |   | | ||| | ||| | |     | ||   | || | |||   |    |||| |       ||    ||   |||||   | ||| |   ||||||| ||||| || ||||| || |||||||| |||||||| ||||||||||||||||| || || ||||||||||||   |||||
gtagagagaaactctattcccaatttctttgaaacgctcttttcctctttccattcacttgttctgttacgaaaacttcaggctgggatacaatttctttatttttcagtttctcaatctgtgacctatgtgaactggagttaattagggtttttaaatttggatacagaaatgaatttgtgagttttatgtagGCTAGTGATAGGTTTAACATCAATTCTCAGCTCGAGCATCTCCAAGCCAAATATGTTGGAACTGGCCATGCTGATTTGAACAGATT

upper sequence: GRMZM2G106574_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA08G40200.1 (Glycine max), 3'ss of exon 1
actttggctcaactggatcttagtcttcactgttcattcaatagctaggtttgctgacattttgaggacaatatttctaacacaatttac-cattttaaa--gGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAATATGTTGGTACAGGGCATGCTGATTTGTCTAGATT
       ||   | |  ||| | |||      |   |  | | |    |||   |    |||| |  |     |  | ||   | |||   | ||||| |  ||| || ||||| || ||||| || || |||||||||||||| ||||||||||||||||| || || ||||| ||||||   |||||
----gtacttttcagtttctcaatctgtgacctatgtgaattgg---agttaattagggttttcaa-attcggtcccgaattgagtttgtgcgttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATT

upper sequence: GRMZM2G106574_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT3G23325.1 (Arabidopsis thaliana), 3'ss of exon 1
-----------------------------------------------------------------------------------actttggctcaa--ctggatcttagtcttcactgttcattcaatagctaggtttgctgacattttgaggacaatatttctaacacaatttaccattttaaagGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAATATGTTGGTACAGGGCATGCTGATTTGTCTAGATT
                                                                                   |   | ||| ||  ||||     | |       |||| |  ||  | |||||||     ||       |  |     ||| ||    |||    || |  |||| || ||||| || |||||||| ||||||||||||||||||||||| || |||||||||||||| ||||| ||||||   |||||
gtttgtctctctcgattcgaaaccctagttacttttttttgttcttatctctaattttatacaatttcttgacgattaagctaagcgtagctgaaatctgggaacaatttgctttagttcttgtaaaggttaggtttttaagcagcagatagttatgtaatctcacttt-tttgtttttgtgcagGCAAGTGATAGGTTTAACATAAATTCTCAGCTTGAGCATCTTCAAGCTAAGTATGTTGGTACAGGTCATGCAGATTTGAGCAGATT

upper sequence: GRMZM2G106574_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT4G14342.1 (Arabidopsis thaliana), 3'ss of exon 1
actttggctcaactggatcttagtcttcac-tgttcattcaatagctag--gtttgctgacattttgaggacaatatttctaacacaatttaccattttaaagGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAATATGTTGGTACAGGGCATGCTGATTTGTCTAGATT
| || ||   |  ||  |||||     ||  | |  ||  ||| |  |    ||||||   | |||    |||   |||         |||    ||||  |||| || ||||| || ||||| || ||||||||||||||||||||||| ||||||||||| || || ||||||||||||  ||||||
aattaggtcgatttgtttcttataaagcatatatagatgaaatcgggaacaatttgctttaaattt---aacatcttttggtttgggtttttttcttttgcagGCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAATATGTTGGAACCGGTCATGCTGATTTGAGTAGATT

upper sequence: GRMZM2G106574_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv05s0049g01230.t01 (Vitis vinifera), 3'ss of exon 1
-------actttggctcaactggatcttagtcttcactgt-tcattcaat-agctaggtttgctgacattttgaggacaatatttctaacacaatttaccattttaaagGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAATATGTTGGTACAGGGCATGCTGATTTGTCTAGATT
       | | |   | |  |      || | |  | ||| |||  || | | | | |||| ||   | ||     ||| | |          || |   |||  | |||| || ||||| || || || ||||| |||||||||||||| ||||| ||||||||||| || || |||||||| |||  ||||||
tgtgtgtagtattttttatttttgaaatactttgaattgtgtcaagcacttatccatgtttacttgtaattgataaacattgtc---------atctgtaattgcacagGCCAGTGATAGGTTTAATATTAACTCCCAGCTTGAGCATCTGCAAGCAAAATATGTTGGAACTGGTCATGCTGACTTGAATAGATT

upper sequence: GRMZM2G106574_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ07968 (Selaginella moellendorffii), 3'ss of exon 1
actttggctcaactggatcttagtcttcactgttcattcaatagctaggtttgctgacattttgaggacaatatttctaacacaatttaccattt--taaagGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAATATGTTGGTACAGGGCATGCTGATTTGTCTAGATT--------------
                                         ||  || |   |||     | |     || |   ||    |    |  | ||||  |  |||| |||||| |||||||||||||||| ||||| |||||||| || ||||| ||||| || || ||||| || ||  |   | ||||              
----------------------------------------gtaagtaag--cgctcgatctctcttcccatttcctcagcgattggtagcgatttcttgcagGCCAGCGATCGATTCAACATAAACTCGCAGCTAGAGCATCTCCAGGCCAAGTATGTGGGCACTGGGCACGCCGACCTCAATCGATTCGAGTGGGCGGTGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32809029|gb|CD961263.1|CD961263
EST:     GATCTCACCATCATGCAG                         GCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
genomic: GATCTCACCATCATGCAGgttggtagtc ... cattttaaagGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
EST: gi|14243476|gb|BG841204.2|BG841204
EST:     AGTTGCCAGCATTCGCTCGAGGTGCCGGACCAGATCTCACCATCATGCAG                         GCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
genomic: AGTTGCCAGCATTCGCTCGAGGTGCCGGACCAGATCTCACCATCATGCAGgttggtagtc ... cattttaaagGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
EST: gi|76912105|gb|DV164577.1|DV164577
EST:     AGTTGCCAGCATTCGCTCGAGGTGCCGGACCAGATCTCACCATCATGCAG                         GCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
genomic: AGTTGCCAGCATTCGCTCGAGGTGCCGGACCAGATCTCACCATCATGCAGgttggtagtc ... cattttaaagGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
EST: gi|4730361|gb|AI649527.1|AI649527
EST:     AGTTGCCAGCATTCGCTCGAGGTGCCGGACCAGATCTCACCATCATGCAG                         GCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
genomic: AGTTGCCAGCATTCGCTCGAGGTGCCGGACCAGATCTCACCATCATGCAGgttggtagtc ... cattttaaagGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
EST: gi|213169581|gb|FM186027.1|FM186027
EST:     AGTTGCCAGCATTCGCTCGAGGTGCCGGACCAGATCTCACCATCATGCAG                         GCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
genomic: AGTTGCCAGCATTCGCTCGAGGTGCCGGACCAGATCTCACCATCATGCAGgttggtagtc ... cattttaaagGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
EST: gi|32855389|gb|CD995070.1|CD995070
EST:     AGTTGCCAGCATTCGCTCGAGGTGCCGGACCAGATCTCACCATCATGCAG                         GCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
genomic: AGTTGCCAGCATTCGCTCGAGGTGCCGGACCAGATCTCACCATCATGCAGgttggtagtc ... cattttaaagGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
EST: gi|32809049|gb|CD961283.1|CD961283
EST:     GATCTCACCATCATGCAGGTTG                      
genomic: GATCTCACCATCATGCA----Ggttggtagtc ... catttta
EST: gi|33285604|gb|CF075399.1|CF075399
EST:     AGTTGCCAGCATTCGCTCGAGGNGCCGGACCAGATCTCACCATCATGCAG                         GCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
genomic: AGTTGCCAGCATTCGCTCGAGGTGCCGGACCAGATCTCACCATCATGCAGgttggtagtc ... cattttaaagGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
EST: gi|60338673|gb|DN205646.1|DN205646
EST:     AGTTGCCAGCATTCGCTCGAGGTGCCGGACCAGATCTCACCATCATGCAG                         GCTAGCGATAGATTCAACATAAACTGTCAGCTTGAGCATCTTCAAGCCAAA
genomic: AGTTGCCAGCATTCGCTCGAGGTGCCGGACCAGATCTCACCATCATGCAGgttggtagtc ... cattttaaagGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
EST: gi|32806541|gb|CD958775.1|CD958775
EST:     GATCTCACCATCATGCAG                         GCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
genomic: GATCTCACCATCATGCAGgttggtagtc ... cattttaaagGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
EST: gi|60358045|gb|DN225018.1|DN225018
EST:     AGTTGCCAGCATTCGCTCGAGGTGCCGGACCAGATCTCACCATCATGCAG                         GCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
genomic: AGTTGCCAGCATTCGCTCGAGGTGCCGGACCAGATCTCACCATCATGCAGgttggtagtc ... cattttaaagGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
EST: gi|37391857|gb|CF633173.1|CF633173
EST:     AGTTGCCAGCATTCGCTCGAGGTGCCGGACCAGATCTCACCATCATGCAG                         GCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
genomic: AGTTGCCAGCATTCGCTCGAGGTGCCGGACCAGATCTCACCATCATGCAGgttggtagtc ... cattttaaagGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
EST: gi|15080579|gb|BI389110.1|BI389110
EST:     CTCGAGGTGCCGGACCAGATCTCACCATCATGCAG                         GCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
genomic: CTCGAGGTGCCGGACCAGATCTCACCATCATGCAGgttggtagtc ... cattttaaagGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
EST: gi|32907954|gb|CF012767.1|CF012767
EST:     AGTTGCCAGCATTCGCTCGAGGTGCCGGACCAGATCTCACCATCATGCAG                         GCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
genomic: AGTTGCCAGCATTCGCTCGAGGTGCCGGACCAGATCTCACCATCATGCAGgttggtagtc ... cattttaaagGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
EST: gi|116819876|gb|EC863043.1|EC863043
EST:     GTTGCCAGCATTCGCTCCGAGGTGCCGGACCAGATCTCACCATCATGCAG                         GCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
genomic: GTTGCCAGCATTCGCT-CGAGGTGCCGGACCAGATCTCACCATCATGCAGgttggtagtc ... cattttaaagGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
EST: gi|213179135|gb|FM184923.1|FM184923
EST:     AGTTGCCAGCATTCGCTCGAGGTGCCGGACCAGATCTCACCATCATGCAG                         GCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
genomic: AGTTGCCAGCATTCGCTCGAGGTGCCGGACCAGATCTCACCATCATGCAGgttggtagtc ... cattttaaagGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
EST: gi|161587329|gb|EY958391.1|EY958391
EST:     CGGACCAGATCTCACCATCATGCAG                         GCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
genomic: CGGACCAGATCTCACCATCATGCAGgttggtagtc ... cattttaaagGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
EST: gi|116829615|gb|EC870229.1|EC870229
EST:     AGTTGCCAGCATTCGCTCGAGGTGCCGGACCAGATCTCACCATCATGCAG                         GCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
genomic: AGTTGCCAGCATTCGCTCGAGGTGCCGGACCAGATCTCACCATCATGCAGgttggtagtc ... cattttaaagGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
EST: gi|211218119|gb|FL199938.1|FL199938
EST:     AGTTGCCAGCATTCGCTCGAGGTGCCGGACCAGATCTCACCATCATGCAG                         GCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
genomic: AGTTGCCAGCATTCGCTCGAGGTGCCGGACCAGATCTCACCATCATGCAGgttggtagtc ... cattttaaagGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
EST: gi|116824059|gb|EC867648.1|EC867648
EST:     AGTAG-TAGCGTACGCTCGAGGTGCCGGACCAGATCTCACCATCATGCAG                         GCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
genomic: AGTTGCCAGCATTCGCTCGAGGTGCCGGACCAGATCTCACCATCATGCAGgttggtagtc ... cattttaaagGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
EST: gi|211218118|gb|FL199937.1|FL199937
EST:     AGTTGCCAGCATTCGCTCGAGGTGCCGGACCAGATCTCACCATCATGCAG                         GCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
genomic: AGTTGCCAGCATTCGCTCGAGGTGCCGGACCAGATCTCACCATCATGCAGgttggtagtc ... cattttaaagGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
EST: gi|32807783|gb|CD960017.1|CD960017
EST:     GATCTCACCATCATGCAG                         GCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA
genomic: GATCTCACCATCATGCAGgttggtagtc ... cattttaaagGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 732

GCACGCTTCTGAATTCGGAGTTGCCAGCATTCGCTCGAGGTGCCGGACCAGATCTCACCATCATGCAGgttggtagtc ... cattttaaagGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAATATGTTGGTACAGGGCATGCTGATTTGTCTAGATT


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 675

GCACGCTTCTGAATTCGGAGTTGCCAGCATTCGCTCGAGGTGCCGGACCAGATCTCACCATCATGCAGgttggtagtc ... cattttaaagGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAATATGTTGGTACAGGGCATGCTGATTTGTCTAGATT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 539

GCACGCTTCTGAATTCGGAGTTGCCAGCATTCGCTCGAGGTGCCGGACCAGATCTCACCATCATGCAGgttggtagtc ... cattttaaagGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAATATGTTGGTACAGGGCATGCTGATTTGTCTAGATT


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 655

GCACGCTTCTGAATTCGGAGTTGCCAGCATTCGCTCGAGGTGCCGGACCAGATCTCACCATCATGCAGgttggtagtc ... cattttaaagGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAATATGTTGGTACAGGGCATGCTGATTTGTCTAGATT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taggtttgctgacattttgaggacaatatttctaacacaatttaccattttaaagGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAATATGTTGGTACAGGGCATGCTGATTTGTCTAGATT
                             ttctaac  putative branch site (score: 655)
                                            ccatttt  putative PPT
                                      aatttaccattttaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
actttggctcaactggatcttagtcttcactgttcattcaatagctaggtttgctgacattttgaggacaatatttctaacacaatttaccattttaaagGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAATATGTTGGTACAGGGCATGCTGATTTGTCTAGATT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - ctggatc
- - - - - - - - - - - - -ttcactg
- - - - - - - - - - - - - - - - - cattcaa
- - - - - - - - - - - - - - - - - - - - - - - - - -tgctgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacacaa