1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tgatcatggacacaccatttttttcttttggaccgccatatagtctgttgatcttgtgtgatgcgctataatgtaatctgggacttgataatgccttcagGCTCTGAAGAGTTCCTTGAACTTATCAAGAGTGCACTTCTTGCGGCCCTAGAAG
species | Zea mays |
transcript | GRMZM2G106140_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGACGGCGTGCAGGCGCTGCCTGTTTATGTGGCCGCAGTGGACCTCGCAT GCTCTGAAGAGTTCCTTGAACTTATCAAGAGTGCACTTCTTGCGGCCCTAGEST: gi|71299986|gb|DR786057.1|DR786057
genomic: AGACGGCGTGCAGGCGCTGCCTGTTTATGTGGCCGCAGTGGACCTCGCATgtaagtccag ... atgccttcagGCTCTGAAGAGTTCCTTGAACTTATCAAGAGTGCACTTCTTGCGGCCCTAG
EST: AGACGGCGTGCAGGCGCTGCCTGTTTATGTGGCCGCAGTGGACCTCGCAT GCTCTGAAGAGTTCCTTGAACTTATCAAGAGTGCACTTCTTGCGGCCCTAGEST: gi|149101985|gb|EE287489.2|EE287489
genomic: AGACGGCGTGCAGGCGCTGCCTGTTTATGTGGCCGCAGTGGACCTCGCATgtaagtccag ... atgccttcagGCTCTGAAGAGTTCCTTGAACTTATCAAGAGTGCACTTCTTGCGGCCCTAG
EST: AGACGGCGTGCAGGCGCTGCCTGTTTATGTGGCCGCAGTGGACCTCGCAT GCTCTGAAGAGTTCCTTGAACTTATCAAGAGTGCACTTCTTGCGGCCCTAGEST: gi|94478604|gb|EB707562.1|EB707562
genomic: AGACGGCGTGCAGGCGCTGCCTGTTTATGTGGCCGCAGTGGACCTCGCATgtaagtccag ... atgccttcagGCTCTGAAGAGTTCCTTGAACTTATCAAGAGTGCACTTCTTGCGGCCCTAG
EST: AGACGGCGTGCAGGCGCTGCCTGTTTATGTGGCCGCAGTGGACCTCGCAT GCTCTGAAGAGTTCCTTGAACTTATCAAGAGTGCACTTCTTGCGGCCCTAGEST: gi|149102475|gb|EE287839.2|EE287839
genomic: AGACGGCGTGCAGGCGCTGCCTGTTTATGTGGCCGCAGTGGACCTCGCATgtaagtccag ... atgccttcagGCTCTGAAGAGTTCCTTGAACTTATCAAGAGTGCACTTCTTGCGGCCCTAG
EST: AGACGGCGTGCAGGCGCTGCCTGTTTATGTGGCCGCAGTGGACCTCGCAT GCTCTGAAGAGTTCCTTGAACTTATCAAGAGTGCACTTCTTGCGGCCCTAGEST: gi|148942821|gb|EC887855.2|EC887855
genomic: AGACGGCGTGCAGGCGCTGCCTGTTTATGTGGCCGCAGTGGACCTCGCATgtaagtccag ... atgccttcagGCTCTGAAGAGTTCCTTGAACTTATCAAGAGTGCACTTCTTGCGGCCCTAG
EST: AGACGGCGTGCAGGCGCTGCCTGTTTATGTGGCCGCAGTGGACCTCGCAT GCTCTGAAGAGTTCCTTGAACTTATCAAGAGTGCACTTCTTGCGGCCCTAGEST: gi|149070989|gb|EE159394.2|EE159394
genomic: AGACGGCGTGCAGGCGCTGCCTGTTTATGTGGCCGCAGTGGACCTCGCATgtaagtccag ... atgccttcagGCTCTGAAGAGTTCCTTGAACTTATCAAGAGTGCACTTCTTGCGGCCCTAG
EST: AGACGGCGTGCAGGCGCTGCCTGTTTATGTGGCCGCAGTGGACCTCGCAT GCTCTGAAGAGTTCCTTGAACTTATCAAGAGTGCACTTCTTGCGGCCCTAGEST: gi|148982071|gb|EE028112.2|EE028112
genomic: AGACGGCGTGCAGGCGCTGCCTGTTTATGTGGCCGCAGTGGACCTCGCATgtaagtccag ... atgccttcagGCTCTGAAGAGTTCCTTGAACTTATCAAGAGTGCACTTCTTGCGGCCCTAG
EST: AGACGGCGTGCAGGCGCTGCCTGTTTATGTGGCCGCAGTGGACCTCGCAT GCTCTGAAGAGTTCCTTGAACTTATCAAGAGTGCACTTCTTGCGGCCCTAG
genomic: AGACGGCGTGCAGGCGCTGCCTGTTTATGTGGCCGCAGTGGACCTCGCATgtaagtccag ... atgccttcagGCTCTGAAGAGTTCCTTGAACTTATCAAGAGTGCACTTCTTGCGGCCCTAG
tgttgatcttgtgtgatgcgctataatgtaatctgggacttgataatgccttcagGCTCTGAAGAGTTCCTTGAACTTATCAAGAGTGCACTTCTTGCGGCCCTAGAAG
tgccttc CT-rich tract
tataatgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatcatggacacaccatttttttcttttggaccgccatatagtctgttgatcttgtgtgatgcgctataatgtaatctgggacttgataatgccttcagGCTCTGAAGAGTTCCTTGAACTTATCAAGAGTGCACTTCTTGCGGCCCTAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - catggac
- - - - - - - - - - - - - - - - - - - - - - -tgttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgatgc