1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tagatgaccatgctatctgataagagcagtaaataaataaattagacgcgtggaatcgaaagtttaatgactttgctctatctttctgtgttttcactagTGCATCAGTACAGTATCTGGATCAGCTTTCAAGAAGGCTAGGACCCAAGAACCCTCCCCGGCTCAATCTACTGTGAAG
species | Zea mays |
transcript | GRMZM2G105494_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAAGCAACATGCTGGAGTTCTCCCACAACAGTAGCAGTTCACCACGTGAG TGCATCAGTACAGGATCTGGATCAGCTTTCAAGAAGGCTAGGACCEST: gi|78084337|gb|DV512730.1|DV512730
genomic: GAAGCAACATGCTGGAGTTCTCCAACAACAGTAGCAGTTCACCACGTGAGgtagggatgc ... ttttcactagTGCATCAGTACAGTATCTGGATCAGCTTTCAAGAAGGCTAGGACC
EST: GAAGCAACATGCTGGAGTTCTCCAACAACAGTAGCAGTTCACCACGTGAG TGCATCAGTACAGTATCTGGATCAGCTTTCAAGAAGGCTAGGACCCAAGAAEST: gi|71435603|gb|DR816653.1|DR816653
genomic: GAAGCAACATGCTGGAGTTCTCCAACAACAGTAGCAGTTCACCACGTGAGgtagggatgc ... ttttcactagTGCATCAGTACAGTATCTGGATCAGCTTTCAAGAAGGCTAGGACCCAAGAA
EST: GAAGCAACATGCTGGAGTTCTCCAACAACAGTAGCAGTTCACCACGTGAG TGCATCAGTACAGTATCTGGATCAGCTTTCAAGAAGGCTAGGACCCAAGAAEST: gi|78112567|gb|DV530961.1|DV530961
genomic: GAAGCAACATGCTGGAGTTCTCCAACAACAGTAGCAGTTCACCACGTGAGgtagggatgc ... ttttcactagTGCATCAGTACAGTATCTGGATCAGCTTTCAAGAAGGCTAGGACCCAAGAA
EST: GAAGCAACATGCTGGAGTTCTCCAACAACAGTAGCAGTTCACCACGTGAG TGCATCAGTACAGTATCTGGATCAGCTTTCAAGAAGGCTAGGACCCAAGACEST: gi|76929547|gb|DV172057.1|DV172057
genomic: GAAGCAACATGCTGGAGTTCTCCAACAACAGTAGCAGTTCACCACGTGAGgtagggatgc ... ttttcactagTGCATCAGTACAGTATCTGGATCAGCTTTCAAGAAGGCTAGGACCCAAGAA
EST: GAAGCAACATGCTGGAGTTCTCCAACAACAGTAGCAGTTCACCACGTGAG TGCATCAGTACAGTATCTGGATCAGCTTTCAAGAAGGCTAGGACCCAAGAA
genomic: GAAGCAACATGCTGGAGTTCTCCAACAACAGTAGCAGTTCACCACGTGAGgtagggatgc ... ttttcactagTGCATCAGTACAGTATCTGGATCAGCTTTCAAGAAGGCTAGGACCCAAGAA
acgcgtggaatcgaaagtttaatgactttgctctatctttctgtgttttcactagTGCATCAGTACAGTATCTGGATCAGCTTTCAAGAAGGCTAGGACCCAAGAACCCTCCCCGGCTCAATCTACTGTGAAG
gtttaat putative branch site (score: 4)
tctttctgtgttttc putative PPT
aaagtttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagatgaccatgctatctgataagagcagtaaataaataaattagacgcgtggaatcgaaagtttaatgactttgctctatctttctgtgttttcactagTGCATCAGTACAGTATCTGGATCAGCTTTCAAGAAGGCTAGGACCCAAGAACCCTCCCCGGCTCAATCTACTGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - accatgc
- - - - - - - - - - - - agcagta
- - - - - - - - - - - - - - - aaataaa