1 5' 3' | 2 5' 3' | 3 5' 3' |
...gttttctttggtccaacatagcttgtctccagtaatacaggagtggatgtggatatttttgtagtgattgacccagtctaatatcttatctttcttgcagAGTGGTAAATCTTGCTTGGGTGAGATAATTTACCGATACATAACAGCTGAGCAGTTCTCACCAGAATGTCTACTGGATTGCTTGGATCTATCATCGGAAC
species | Zea mays |
transcript | GRMZM2G105253_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCTCGCAGAGATGGAAATCCCCGAAATGTACCTGGAGACACTGCCCAAG AGTGGTAAATCTTGCTTGGGTGAGATAATTTACCGATACATAACAGCTGAGEST: gi|76288447|gb|DV028015.1|DV028015
genomic: TGCTCGCAGAGATGGAAATCCCCGAAATGTACCTGGAGACACTGCCCAAGgtaaaatact ... tttcttgcagAGTGGTAAATCTTGCTTGGGTGAGATAATTTACCGATACATAACAGCTGAG
EST: TGCTCGCAGAGATGGAAATCCCCGAAATGTACCTGGAGACACTGCCCAAG AGTGGTAAATCTTGCTTGGGTGAGATAATTTACCGATACATAACAGCTGAGEST: gi|21891658|gb|BQ744871.1|BQ744871
genomic: TGCTCGCAGAGATGGAAATCCCCGAAATGTACCTGGAGACACTGCCCAAGgtaaaatact ... tttcttgcagAGTGGTAAATCTTGCTTGGGTGAGATAATTTACCGATACATAACAGCTGAG
EST: TGCTCGCAGAGATGGAAATCCCCGAAATGTACCTGGAGACACTGCCCAAG AGTGGTAAATCTTGCTTGGGTGAGATAATTTACCGATACATAACAGCTGAG
genomic: TGCTCGCAGAGATGGAAATCCCCGAAATGTACCTGGAGACACTGCCCAAGgtaaaatact ... tttcttgcagAGTGGTAAATCTTGCTTGGGTGAGATAATTTACCGATACATAACAGCTGAG
gatgtggatatttttgtagtgattgacccagtctaatatcttatctttcttgcagAGTGGTAAATCTTGCTTGGGTGAGATAATTTACCGATACATAACAGCTGAGCAGTTCTCACCAGAATGTCTACTGGATTGCTTGGATCTATCATCGGAAC
gtctaat putative branch site (score: 31)
tatcttatctttctt CT-rich tract
taatatcttatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttctttggtccaacatagcttgtctccagtaatacaggagtggatgtggatatttttgtagtgattgacccagtctaatatcttatctttcttgcagAGTGGTAAATCTTGCTTGGGTGAGATAATTTACCGATACATAACAGCTGAGCAGTTCTCACCAGAATGTCTACTGGATTGCTTGGATCTATCATCGGAAC
- - - - - - -caacata
- - - - - - - - - - - - - - - - - - - - - gtggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgattg