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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccgcgcatctgtctgcgtctcatgtcttactatgttcatgataaggaaaaactatgtcttgtaggtaattccttgtttttttttttctttcatttgccagGAAAAGATCCGGGTCGCCCTCTACGTGCAGCAGGCCGCGCTCCACTTCATCGATGGTACGGCCAAGTTGCGCTTCATCTTCTCTACGCATG

Basic information

species Zea mays
transcript GRMZM2G104730_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G104730_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os11g04460.1 (Oryza sativa), 3'ss of exon 1
---ccgcgcatctgtctgcgtctcatgtcttactatgttcatgataaggaaaaactatgtcttgtaggtaattccttgtttttttttttctttcatttgccagGAAAAGATCCGGGTCGCCCTCTACGTGCAGCAGGCCGCGCTCCACTTCATCGATGGTACGGCCAAGTTGCGCTTCATCTTCTCTACGCATG
         || ||  |   ||| | | ||    | |   ||||| |  | |   ||| |   | ||  ||     | |   ||||| | |||  ||| |||||||||||| ||||| |||||||| ||||||||||| || |||   || |  ||||                                    
ttttataatatgtgattttatcttacgacta--caagaaaatgattataatattatatataa-gcagtaaaaatggtttccctttttgtgtttgctttaccagGAAAAGATTCGGGTTGCCCTCTATGTGCAGCAGGCTGCACTCATTTTTAGTGATG------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaaaactatgtcttgtaggtaattccttgtttttttttttctttcatttgccagGAAAAGATCCGGGTCGCCCTCTACGTGCAGCAGGCCGCGCTCCACTTCATCGATGGTACGGCCAAGTTGCGCTTCATCTTCTCTACGCATG
                       ttccttgttttttttt  CT-rich tract
                           ttgtttttttttttct  TA-rich tract