Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgaaggccttgattgtggtagcgtatttgctggcctacatgtaaaaatggttgtctgctcagtgtttcttgactagtgcttttgcgtgtcctctttcagGTGACATCGATCTCATTGCTGAAACGCGGGCAAAAGAAGTCTCTGAGTTTCTTGAAATGCTAGATACTTCGAGGGACGGACGATCTTCCAAGGTCCATGG

Basic information

species Zea mays
transcript GRMZM2G104449_T02
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148983373|gb|EE029360.2|EE029360
EST:     GCTGGTGAAGAAGCAGATCCTGGCGTCGTCCCTGCCCGGCTCCGATCAAG                         GTGACATCGATCTCATTGCTGAAACGCGGGCAAAAGAAGTCTCTGAGTTTC
genomic: GCTGGTGAAGAAGCAGATCCTGGCGTCGTCCCTGCCCGGCTCCGATCAAGgtgcttgctt ... cctctttcagGTGACATCGATCTCATTGCTGAAACGCGGGCAAAAGAAGTCTCTGAGTTTC
EST: gi|149078013|gb|EE166751.2|EE166751
EST:     GCTGGTGAAGAAGCAGATCCTGGCGTCGTCCCTGCCCGGCTCCGATCAAG                         GTGACATCGATCTCATTGCTGAAACGCGGGCAAAAGAAGTCTCTGAGTTTC
genomic: GCTGGTGAAGAAGCAGATCCTGGCGTCGTCCCTGCCCGGCTCCGATCAAGgtgcttgctt ... cctctttcagGTGACATCGATCTCATTGCTGAAACGCGGGCAAAAGAAGTCTCTGAGTTTC
EST: gi|71429317|gb|DR810367.1|DR810367
EST:     GCTGGTGAAGAAGCAGATCCTGGCGTCGTCCCTGCCCGGCTCCGATCAAG                         GTGACATCGATCTCATTGCTGAAACGCGGGCAAAAGAAGTCTCTGAGTTTC
genomic: GCTGGTGAAGAAGCAGATCCTGGCGTCGTCCCTGCCCGGCTCCGATCAAGgtgcttgctt ... cctctttcagGTGACATCGATCTCATTGCTGAAACGCGGGCAAAAGAAGTCTCTGAGTTTC
EST: gi|76014645|gb|DT941815.1|DT941815
EST:     GCTGGTGAAGAAGCAGATCCTGGCGTCGTCCCTGCCCGGCTCCGATCAAG                         GTGACATCGATCTCATTGCTGAAACGCGGGCAAAAGAAGTCTCTGAGTTTC
genomic: GCTGGTGAAGAAGCAGATCCTGGCGTCGTCCCTGCCCGGCTCCGATCAAGgtgcttgctt ... cctctttcagGTGACATCGATCTCATTGCTGAAACGCGGGCAAAAGAAGTCTCTGAGTTTC
EST: gi|211453618|gb|FL253931.1|FL253931
EST:     GCTGGTGAAGAAGCAGATCCTGGCGTCGTCCCTGCCCGGCTCCGATCAAG                         GTGACATCGATCTCATTGCTGAAACGCGGGCAAAAGAAGTCTCTGAGTTTC
genomic: GCTGGTGAAGAAGCAGATCCTGGCGTCGTCCCTGCCCGGCTCCGATCAAGgtgcttgctt ... cctctttcagGTGACATCGATCTCATTGCTGAAACGCGGGCAAAAGAAGTCTCTGAGTTTC
EST: gi|149084046|gb|EE173442.2|EE173442
EST:     GCTGGTGAAGAAGCAGATCCTGGCGTCGTCCCTGCCCGGCTCCGATCAAG                         GTGACATCGATCTCATTGCTGAAACGCGGGCAAAAGAAGTCTCTGAGTTTC
genomic: GCTGGTGAAGAAGCAGATCCTGGCGTCGTCCCTGCCCGGCTCCGATCAAGgtgcttgctt ... cctctttcagGTGACATCGATCTCATTGCTGAAACGCGGGCAAAAGAAGTCTCTGAGTTTC
EST: gi|93284538|gb|EB676802.1|EB676802
EST:     GCTGGTGAAGAAGCAGATCCTGGCGTCGTCCCTGCCCGGCTCCGATCAAG                         GTGACATCGATCTCATTGCTGAAACGCGGGCAAAAGAAGTCTCTGAGTTTC
genomic: GCTGGTGAAGAAGCAGATCCTGGCGTCGTCCCTGCCCGGCTCCGATCAAGgtgcttgctt ... cctctttcagGTGACATCGATCTCATTGCTGAAACGCGGGCAAAAGAAGTCTCTGAGTTTC
EST: gi|211288219|gb|FL395056.1|FL395056
EST:     GCTGGTGAAGAAGCAGATCCTGGCGTCGTCCCTGCCCGGCTCCGATCAAG                         GTGACATCGATCTCATTGCTGAAACGCGGGCAAAAGAAGTCTCTGAGTTTC
genomic: GCTGGTGAAGAAGCAGATCCTGGCGTCGTCCCTGCCCGGCTCCGATCAAGgtgcttgctt ... cctctttcagGTGACATCGATCTCATTGCTGAAACGCGGGCAAAAGAAGTCTCTGAGTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatggttgtctgctcagtgtttcttgactagtgcttttgcgtgtcctctttcagGTGACATCGATCTCATTGCTGAAACGCGGGCAAAAGAAGTCTCTGAGTTTCTTGAAATGCTAGATACTTCGAGGGACGGACGATCTTCCAAGGTCCATGG
                      tcttgac  putative branch site (score: 3)
                                          tgtcctctttc  putative PPT