Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtgcttttccccttaatttgtacagccatagtctcccccacccaaatatgccactaattttgtgtatctatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTTGGGCGTCCTCGTCACACCGGTGTCATGGTAGGGATGGGGCAGAAGGATG

Basic information

species Zea mays
transcript GRMZM2G104017_T04
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G104017_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 2
-----------gtcagtgcttttccccttaatttgtacagccatagtctcccccacccaaatatgccactaattttgtgtatctatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTTGGGCGTCCTCGTCACACCGGTGTCATGGTAGGGATGGGGCAGAAGGATG
            |      |||| | ||||  |  |  |      |||  | ||  |  |||||  || ||   ||   | || ||| | ||||||||||| || || ||||||||||||||||| || |||||||| || ||||| |||||||| ||||||||||| |||||||| ||||||||||||||||
gtctgattttctttttcttttttactcttacgtaatgtaatgtatgtcgtctcctgctgaatattacatta-cattacatttc-atcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTTGGCCGTCCTCGCCACACCGGTGTTATGGTAGGAATGGGGCAGAAGGATG

upper sequence: GRMZM2G104017_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 2
--------------------------------------gtcagtgctttt--ccccttaatttgtacagccatagtctcccccacccaaatatgccactaattt-tgtgtatctatc-----ttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTTGGGCGTCCTCGTCACACCGGTGTCATGGTAGGGATGGGGCAGAAGGATG
                                      | || ||       |   | | | ||| |   | |||| | |       |||||||  | | || | | | | | | ||     ||  ||||||||||||| || |||||||| || ||||| || ||||| |||||  ||||| | || || || || ||||| ||||| |||||||| ||||||||||
gttagaagatgttttgccaattgatgagtgtttcttgtgccattgaagaagactgttcactctgtgcttgcttagtattcattgtt-aaatatgatattgatatatatatttttctcgatgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATTGGGAGACCACGCCATACTGGTGTAATGGTTGGGATGGGTCAGAAGGATG

upper sequence: GRMZM2G104017_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 2
----gtcagtgcttttccccttaatttgtacagccatagtctcccccacc-caaatatg-----ccactaattttg-tgtatctatcttc-tagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTTGGGCGTCCTCGTCACACCGGTGTCATGGTAGGGATGGGGCAGAAGGATG
    || ||    |||      |   ||||  |   ||  || |        | || ||     | ||| ||  || | | | ||| ||   ||||||||||||| || |||||||| || || || || ||||| || || ||||| |||||| | ||||| ||||||||||| || ||||| ||||| ||||
gtgagttagactgtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatgatttttgtatattaacagGCTGGTTTTGCTGGTGATGATGCCCCGAGAGCAGTGTTCCCAAGTATTGTTGGTCGTCCTAGGCACACTGGTGTCATGGTTGGTATGGGTCAGAAAGATG

upper sequence: GRMZM2G104017_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 1
--------------gtcagtgcttttccccttaatttgta--cagccatagtctcccccacccaaatatgc---cactaattttgtgtatctatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTTGGGCGTCCTCGTCACACCGGTGTCATGGTAGGGATGGGGCAGAAGGATG
              ||  |   |       | |||||| |  |||  ||  |||     |      | | |   || |||   ||   |   || | | ||||||| ||||| || |||||||| || |||||||| ||||| || || ||||| || ||||| ||||| ||||||||||| |||||||| || |||||||
attaaactgattctgtttgctgtggcgaggtgaatttgcattcagtgattatctttgttagttttgttttcacacattaacgctgctcaaaaatgtgc-agGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211528816|gb|FL109162.1|FL109162
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|17970009|gb|BM276777.1|BM276777
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGAACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|211531823|gb|FL109180.1|FL109180
EST:     TGAGGACATCCAGCCTCTTGTCTGCGACAATGGAAACCGGAATGGTCAAG                         GCTGGTTTTAGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGT
genomic: TGAGGACATCCAGCCTCTTGTCTGCGACAATGGCA-CCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTT-GCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGT
EST: gi|17970119|gb|BM276870.1|BM276870
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGAACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|148962309|gb|EE013139.2|EE013139
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|211537829|gb|FL109203.1|FL109203
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|149097364|gb|EE183207.2|EE183207
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|211528812|gb|FL109158.1|FL109158
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|211531815|gb|FL109172.1|FL109172
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|60358575|gb|DN225548.1|DN225548
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|211534815|gb|FL109184.1|FL109184
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|211531817|gb|FL109174.1|FL109174
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|149087628|gb|EE177018.2|EE177018
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|149017500|gb|EE045696.2|EE045696
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|31358965|gb|CD443322.1|CD443322
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|211531816|gb|FL109173.1|FL109173
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGAACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|211528814|gb|FL109160.1|FL109160
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|211528822|gb|FL109168.1|FL109168
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|211534821|gb|FL109190.1|FL109190
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|67041579|gb|CO467834.1|CO467834
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGAACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|211528818|gb|FL109164.1|FL109164
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|32864284|gb|CF003966.1|CF003966
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGAACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|29167959|gb|CB411219.1|CB411219
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|32865014|gb|CF004696.1|CF004696
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGAACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|19058870|gb|BM737537.1|BM737537
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGAACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|211531825|gb|FL109182.1|FL109182
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGAACCCGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|211531824|gb|FL109181.1|FL109181
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|211537825|gb|FL109199.1|FL109199
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|211531820|gb|FL109177.1|FL109177
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGAACCGGAATGSTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|211528811|gb|FL109157.1|FL109157
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|211534820|gb|FL109189.1|FL109189
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|211531821|gb|FL109178.1|FL109178
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|32914327|gb|CF019139.1|CF019139
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGAACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|4152156|gb|AI372290.1|AI372290
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|31363803|gb|CD448158.1|CD448158
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|211531819|gb|FL109176.1|FL109176
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|211534819|gb|FL109188.1|FL109188
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|211531812|gb|FL109169.1|FL109169
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|149080410|gb|EE169431.2|EE169431
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|211534828|gb|FL109197.1|FL109197
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|61117775|gb|DN558736.1|DN558736
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|211534829|gb|FL109198.1|FL109198
EST:     G-GAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|6270028|gb|AW157999.1|AW157999
EST:     GAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|87153890|gb|DY398679.1|DY398679
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGAACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|211534827|gb|FL109196.1|FL109196
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|31440945|gb|CD510376.1|CD510376
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|31353858|gb|CD438215.1|CD438215
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|211528815|gb|FL109161.1|FL109161
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|211534824|gb|FL109193.1|FL109193
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGAACCGGAATGGTCAAG                         GCTGGTTTTGCCGGC---GATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|148931636|gb|EC874778.2|EC874778
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|211534818|gb|FL109187.1|FL109187
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGAACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|22489553|gb|BU049476.1|BU049476
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGAACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|211528819|gb|FL109165.1|FL109165
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGAACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|211528821|gb|FL109167.1|FL109167
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|211528820|gb|FL109166.1|FL109166
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|149082827|gb|EE172052.2|EE172052
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|211528813|gb|FL109159.1|FL109159
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|17969990|gb|BM276759.1|BM276759
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGAACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|149013960|gb|EE043464.2|EE043464
EST:     GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: gi|211534823|gb|FL109192.1|FL109192
EST:     GTGAGGACATCCAGCCTCTTGTMWGCGACAATGGCACCGGAATGGTCAAG                         GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agccatagtctcccccacccaaatatgccactaattttgtgtatctatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTTGGGCGTCCTCGTCACACCGGTGTCATGGTAGGGATGGGGCAGAAGGATG
                            cactaat  putative branch site (score: 2)
                                           tctatcttct  putative PPT
                             actaatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcagtgcttttccccttaatttgtacagccatagtctcccccacccaaatatgccactaattttgtgtatctatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTTGGGCGTCCTCGTCACACCGGTGTCATGGTAGGGATGGGGCAGAAGGATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG