1 5' 3' | 2 5' 3' | 3 5' 3' |
gtcagtgcttttccccttaatttgtacagccatagtctcccccacccaaatatgccactaattttgtgtatctatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTTGGGCGTCCTCGTCACACCGGTGTCATGGTAGGGATGGGGCAGAAGGATG
species | Zea mays |
transcript | GRMZM2G104017_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTTEST: gi|6270028|gb|AW157999.1|AW157999
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: GAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTTEST: gi|29167959|gb|CB411219.1|CB411219
genomic: GAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
EST: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagtgctt ... tatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTT
agccatagtctcccccacccaaatatgccactaattttgtgtatctatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTTGGGCGTCCTCGTCACACCGGTGTCATGGTAGGGATGGGGCAGAAGGATG
cactaat putative branch site (score: 2)
tctatcttct putative PPT
actaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtgcttttccccttaatttgtacagccatagtctcccccacccaaatatgccactaattttgtgtatctatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTTGGGCGTCCTCGTCACACCGGTGTCATGGTAGGGATGGGGCAGAAGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG