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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgcctgcacacaaaccatgtgaacactgcagagattagatgttcgccttgttgtgaattttgtattcatgggtgcagtgggctacacatgaattatgcagGCACTGGAATTAACAAGCCGGATTACCTTGCGACGGTGGATTTGGATCCCAGCTCTCCTACATACTCCCAGGTGATCCACAGGCTCCCGGTCACCCACAT

Basic information

species Zea mays
transcript GRMZM2G103812_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G103812_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g68770.1 (Oryza sativa), 3'ss of exon 1
-----cgcctgcacacaaaccatgtgaacact-gcagagattagatgttcgccttgttgtga--attttgtattcatgggtgcagtgggctacacatgaattatgcagGCACTGGAATTAACAAGCCGGATTACCTTGCGACGGTGGATTTGGATCCCAGCTCTCCTACATACTCCCAGGTGATCCACAGGCTCCCGGTCACCCACAT
      |  |        ||  | ||||||   | | || | |||  |||     | ||| |  | ||||| || |||| |    ||    | |||||||     |||| |||||||||||||||||||||||||| |  ||||||||  |||| ||||  || |||||||||||||| ||||||||||||||||| ||||||||  |
ttacatggtttattcttgacagtctgaacaaaagaataggtcagagtttcttgcaggtgtcatgaatttgttttgatggatt--atgaatca-acatgaa-----cagGTACTGGAATTAACAAGCCGGATTACCTGGGTACGGTGGACGTGGACCCCAATTCCCCTACATACTCCCAAGTGATCCACAGGCTCCCAGTCACCCATGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149083207|gb|EE172484.2|EE172484
EST:     GGAGAAGGGCCCCAGGGAGAAGCTCGTCTACGTCACCTGCGTCTACAACG                         GCACTGGAATTAACAAGCCGGATTACCTTGCGACGGTGGATTTGGATCCCA
genomic: GGAGAAGGGCCCCAGGGAGAAGCTCGTCTACGTCACCTGCGTCTACAACGgtgcgtgctt ... aattatgcagGCACTGGAATTAACAAGCCGGATTACCTTGCGACGGTGGATTTGGATCCCA
EST: gi|211184169|gb|FL127370.1|FL127370
EST:     GGAGAAGGGCCCCAGGGAGAAGCTCGTCTACGTCACCTGCGTCTACAACG                         GCACTGGAATTAACAAGCCGGATTACCTTGCGACGGTGGATTTGGATCCCA
genomic: GGAGAAGGGCCCCAGGGAGAAGCTCGTCTACGTCACCTGCGTCTACAACGgtgcgtgctt ... aattatgcagGCACTGGAATTAACAAGCCGGATTACCTTGCGACGGTGGATTTGGATCCCA
EST: gi|31354133|gb|CD438490.1|CD438490
EST:     GGAGAAGGGCCCCAGGGAGAAGCTCGTCTACGTCACCTGCGTCTACAACG                         GCACTGGAATTAACAAGCCGGATTACCTTGCGACGGTGGATTTGGATCCCA
genomic: GGAGAAGGGCCCCAGGGAGAAGCTCGTCTACGTCACCTGCGTCTACAACGgtgcgtgctt ... aattatgcagGCACTGGAATTAACAAGCCGGATTACCTTGCGACGGTGGATTTGGATCCCA
EST: gi|29167955|gb|CB411215.1|CB411215
EST:     AAGCTCGTCTACGTCACCTGCGTCTACAACG                         GCACTGGAATTAACAAGCCGGATTACCTTGCGACGGTGGATTTGGATCCCA
genomic: AAGCTCGTCTACGTCACCTGCGTCTACAACGgtgcgtgctt ... aattatgcagGCACTGGAATTAACAAGCCGGATTACCTTGCGACGGTGGATTTGGATCCCA
EST: gi|5567017|gb|AI881928.1|AI881928
EST:     GCAGAAGGGCCCCAGGGAGAAGCTCGTCTACGTCACCTGCGTCTACAACG                         GCACTGGAATTAACAAGCCGAATTACCTTGCGACGGGGGATTTGGATCCCA
genomic: GGAGAAGGGCCCCAGGGAGAAGCTCGTCTACGTCACCTGCGTCTACAACGgtgcgtgctt ... aattatgcagGCACTGGAATTAACAAGCCGGATTACCTTGCGACGGTGGATTTGGATCCCA
EST: gi|67031397|gb|CO460146.1|CO460146
EST:     CCCAGGGAGTAGCTCGTCTACGTCACCTGCGTCTACAACG                         GCACCGGAATTAACAAGCCGGATTACCTTGCGACGGTGGATTTGGATCCCA
genomic: CCCAGGGAGAAGCTCGTCTACGTCACCTGCGTCTACAACGgtgcgtgctt ... aattatgcagGCACTGGAATTAACAAGCCGGATTACCTTGCGACGGTGGATTTGGATCCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttgttgtgaattttgtattcatgggtgcagtgggctacacatgaattatgcagGCACTGGAATTAACAAGCCGGATTACCTTGCGACGGTGGATTTGGATCCCAGCTCTCCTACATACTCCCAGGTGATCCACAGGCTCCCGGTCACCCACAT
          aattttgtattcat  TA-rich tract