ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
PPT, BS, UA-tract

Sequence

atgc intronic sequence ATGC exonic sequence

gtaagcttgctcatccacgtccctcttctgtttttacgccctgctaaccatgggctttaatgaatgatctggagagaagaaggctgacctaacccttgctttgcttcgtggctcttcgcagTTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGCGCGGCGAAATTCGACTTCGCGAACACCACGGCGCTCTTCTTCGTCCAGC

Basic information

species	Zea mays
transcript	GRMZM2G103101_T02
intron #	2
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G103101_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g52650.1 (Oryza sativa), 3'ss of exon 2

gtaagcttgctcatccacgtccctcttctgtttttacgccctgctaaccatgggctttaatga-atgatctggagagaagaaggctgacctaacccttgctttgcttcgtggctcttcgcagTTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGCGCGGCGAAATTCGACTTCGCGAACACCACGGCGCTCTTCTTCGTCCAGC
                   |  || |      | |       |  |  ||||      | |   || ||||  | | ||   |||  |       ||   |     ||   | |||  ||||||| | || |||||||| | || | |||| || |||||||| |||||||| ||  | |||||||||||||| ||||||||||| |||||||| |||||||
-------------------tggctgtgtgccctatggaagaggtcaggcatgtaaaacattttcattatctttaaaaaaagtggcgcat---ggtctaaataattgtcactgttctctgcagTTGATACGTGTATCAGGAATCAACAACCTGCCAGTGTGGTTTGAAGCAGGTGCAACAAAATTCGACTTCGCTAACACCACGGCACTCTTCTTTGTCCAGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|13126673|gb|BG317243.1|BG317243

EST:     TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGAC                         TTGCTCCGCGTATCA
genomic: TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGACgtaagcttgc ... ctcttcgcagTTGCTCCGCGTATCA

EST: gi|149100655|gb|EE186743.2|EE186743

EST:     TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGAC                         TTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGC
genomic: TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGACgtaagcttgc ... ctcttcgcagTTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGC

EST: gi|78022949|gb|DV491336.1|DV491336

EST:     TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGAC                         TTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGC
genomic: TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGACgtaagcttgc ... ctcttcgcagTTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGC

EST: gi|211329945|gb|FL040612.1|FL040612

EST:     TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGAC                         TTGCTCCGCGTATCAGGGATCAGGGACCTCCCCGTGTGGTTCGAAGCAGGC
genomic: TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGACgtaagcttgc ... ctcttcgcagTTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGC

EST: gi|149111433|gb|EE294936.2|EE294936

EST:     TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGAC                         TTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGC
genomic: TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGACgtaagcttgc ... ctcttcgcagTTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGC

EST: gi|211329944|gb|FL040611.1|FL040611

EST:     TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGAC                         TTGCTCCGCGTATCAGGGATCAGGGACCTCCCCGTGTGGTTCGAAGCAGGC
genomic: TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGACgtaagcttgc ... ctcttcgcagTTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGC

EST: gi|149077487|gb|EE166183.2|EE166183

EST:     TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGAC                         TTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGC
genomic: TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGACgtaagcttgc ... ctcttcgcagTTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGC

EST: gi|94472956|gb|EB701914.1|EB701914

EST:     TGCACTGCCGGTTCGCCATGGCAGGAGTCGCCGGCATCCTTTTCACTGAC                         TTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGC
genomic: TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGACgtaagcttgc ... ctcttcgcagTTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGC

EST: gi|211329942|gb|FL040609.1|FL040609

EST:     TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGAC                         TTGCTCCGCGTATCAGGGATCAGGGACCTCCCCGTGTGGTTCGAAGCAGGC
genomic: TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGACgtaagcttgc ... ctcttcgcagTTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGC

EST: gi|13516123|gb|BG518399.1|BG518399

EST:     TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGAC                         TTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGT
genomic: TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGACgtaagcttgc ... ctcttcgcagTTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGT

EST: gi|211327787|gb|FL040601.1|FL040601

EST:     TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGAC                         TTGCTCCGCGTATCAGGGATCAGGGACCTCCCCGTGTGGTTCGAAGCAGGC
genomic: TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGACgtaagcttgc ... ctcttcgcagTTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGC

EST: gi|211327788|gb|FL040602.1|FL040602

EST:     TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGAC                         TTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGC
genomic: TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGACgtaagcttgc ... ctcttcgcagTTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGC

EST: gi|211327789|gb|FL040603.1|FL040603

EST:     TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGAC                         TTGCTCCGCGTATCATGGAACAGCGACCTCCCCGTGTGGTTCGAAGCACGC
genomic: TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGACgtaagcttgc ... ctcttcgcagTTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGC

EST: gi|149100656|gb|EE186744.2|EE186744

EST:     TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGAC                         TTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGC
genomic: TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGACgtaagcttgc ... ctcttcgcagTTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGC

EST: gi|211329943|gb|FL040610.1|FL040610

EST:     TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGAC                         TTGCTCCGCGTATCATGGAACAGCGACCTCCCCGTGTGGTTCGAAGCACGC
genomic: TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGACgtaagcttgc ... ctcttcgcagTTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGC

EST: gi|211329938|gb|FL040605.1|FL040605

EST:     TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGAC                         TTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGC
genomic: TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGACgtaagcttgc ... ctcttcgcagTTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGC

EST: gi|211329939|gb|FL040606.1|FL040606

EST:     TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGAC                         TTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGC
genomic: TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGACgtaagcttgc ... ctcttcgcagTTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGC

EST: gi|148994267|gb|EE034026.2|EE034026

EST:     TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGAC                         TTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGC
genomic: TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGACgtaagcttgc ... ctcttcgcagTTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGC

EST: gi|148995804|gb|EE035035.2|EE035035

EST:     TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGAC                         TTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGC
genomic: TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGACgtaagcttgc ... ctcttcgcagTTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGC

EST: gi|148967697|gb|EE018962.2|EE018962

EST:     TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGAC                         TTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGC
genomic: TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGACgtaagcttgc ... ctcttcgcagTTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGC

EST: gi|148987230|gb|EE031063.2|EE031063

EST:     TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGAC                         TTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGC
genomic: TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGACgtaagcttgc ... ctcttcgcagTTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGC

EST: gi|211327784|gb|FL040598.1|FL040598

EST:     TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGAC                         TTGCTCCGCGTATCAGGGAACAGCGAC
genomic: TGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGACgtaagcttgc ... ctcttcgcagTTGCTCCGCGTATCAGGGAACAGCGAC

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 3 RNA-Seq libraries.

Block sizes: 12 (upstream exon), 43 (downstream exon)
Score: 8

CCTCGGCGAGGAGCCCGAAGCCTTGAAGTGGTACGTTCAGGCCGAGCTCGTGCACTGCCGGTTCGCCATGGCAGGGGTCGCCGGCATCCTTTTCACTGACgtaagcttgc ... ctcttcgcagTTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGCGCGGCGAAATTCGACTTCGCGAACACCACGGCGCTCTTCTTCGTCCAGC

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 217

Block sizes: 47 (upstream exon), 48 (downstream exon)
Score: 32

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

atctggagagaagaaggctgacctaacccttgctttgcttcgtggctcttcgcagTTGCTCCGCGTATCAGGGAACAGCGACCTCCCCGTGTGGTTCGAAGCAGGCGCGGCGAAATTCGACTTCGCGAACACCACGGCGCTCTTCTTCGTCCAGC