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gtcagtttcactttgctgtgtaaatctgtcttttctgcaaataatgaatgatactcattcttgcaccctaagaaactagaattcataaatatctttcagtgactaattatgtggtatataagctaaaccagtagGTCTGGAGCAGATTTGGGTGGTTTTGATGGGGAAGCTGATGACGACAACAATGTGGAACTAGAGAAAAGCAATGTCCTGTTAATGGGACCTACTGGCTCT
species | Zea mays |
transcript | GRMZM2G101791_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAGTTTACAACCACTATAAACGGATATACCATCAATCTTTACAAAAGGGTAGEST: gi|148945417|gb|EC890645.2|EC890645
genomic: GCAGTTTACAACCACTATAAACGGATATACCATCAATCTTTACAAAA-GG--Ggtcagtttca ... aaaccagt
EST: GCAGTTTACAACCACTATAAACGGATATACCATCAATCTTTACAAAAGGG TEST: gi|148945417|gb|EC890645.2|EC890645
genomic: GCAGTTTACAACCACTATAAACGGATATACCATCAATCTTTACAAAAGGGgtcagtttca ... aaaccagtag-
EST: GCAGTTTACAACCACTATAAACGGATATACCATCAATCTTTACAAAAGGG TEST: gi|148945417|gb|EC890645.2|EC890645
genomic: GCAGTTTACAACCACTATAAACGGATATACCATCAATCTTTACAAAAGGGgtcagtttca ... aaaccagtag-
EST: GCAGTTTACAACCACTATAAACGGATATACCATCAATCTTTACAAAAGGG TEST: gi|26558610|gb|CA830845.1|CA830845
genomic: GCAGTTTACAACCACTATAAACGGATATACCATCAATCTTTACAAAAGGGgtcagtttca ... aaaccagtag-
EST: GCAGTTTACAACCACTATAAACGGATATACCATCAATCTTTACAAAAGGGTAGEST: gi|87156336|gb|DY401125.1|DY401125
genomic: GCAGTTTACAACCACTATAAACGGATATACCATCAATCTTTACAAAA-GG--Ggtcagtttca ... aaaccagt
EST: GCAGTTTACAACCACTATAAACGGATATACCATCAATCTTTACAAAAGGGTAG
genomic: GCAGTTTACAACCACTATAAACGGATATACCATCAATCTTTACAAAA-GG--Ggtcagtttca ... aaaccagt
aattcataaatatctttcagtgactaattatgtggtatataagctaaaccagtagGTCTGGAGCAGATTTGGGTGGTTTTGATGGGGAAGCTGATGACGACAACAATGTGGAACTAGAGAAAAGCAATGTCCTGTTAATGGGACCTACTGGCTCT
ataaatatctttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtttcactttgctgtgtaaatctgtcttttctgcaaataatgaatgatactcattcttgcaccctaagaaactagaattcataaatatctttcagtgactaattatgtggtatataagctaaaccagtagGTCTGGAGCAGATTTGGGTGGTTTTGATGGGGAAGCTGATGACGACAACAATGTGGAACTAGAGAAAAGCAATGTCCTGTTAATGGGACCTACTGGCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA