1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agtgtagaagttgttctcgtaaaagttatgggtacattatggctttgactgcacatgtgggtctacaattaaatgcattattgtgacataacattcacagAAATCAGGATGATGCACCAGAAAACAACCCTAGACGCCTGCGTCCTGGGAAAGTATCTCCACGCCTTAGTGTTCCCAATCATATACAACGGCCTCCATAT
species | Zea mays |
transcript | GRMZM2G101438_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAGCAACGAGAACGCTATGCAACTTGGTGGATATCCTATTTAACAGGAG AAATCAGGATGATGCACCAGAAAACAACCCTAGACGCCTGCGTCCTGGGAAEST: gi|148995508|gb|EE034697.2|EE034697
genomic: CAAGCAACGAGAACGCTATGCAACTTGGTGGATATCCTATTTAACAGGAGgtgagcttta ... acattcacagAAATCAGGATGATGCACCAGAAAACAACCCTAGACGCCTGCGTCCTGGGAA
EST: CAAGCAACGAGAACGCTATGCAACTTGGTGGATATCCTATTTAACAGGAG AAATCAGGATGATGCACCAGAAAACAACCCTAGACGCCTGCGTCCTGGGAAEST: gi|211227812|gb|FL170955.1|FL170955
genomic: CAAGCAACGAGAACGCTATGCAACTTGGTGGATATCCTATTTAACAGGAGgtgagcttta ... acattcacagAAATCAGGATGATGCACCAGAAAACAACCCTAGACGCCTGCGTCCTGGGAA
EST: CAAGCAACGAGAACGCTATGCAACTTGGTGGATATCCTATTTAACAGGAG AAATCAGGATGATGCACCAGAAAACAACCCTAGACGCCTGCGTCCTGGGAAEST: gi|76912468|gb|DV164746.1|DV164746
genomic: CAAGCAACGAGAACGCTATGCAACTTGGTGGATATCCTATTTAACAGGAGgtgagcttta ... acattcacagAAATCAGGATGATGCACCAGAAAACAACCCTAGACGCCTGCGTCCTGGGAA
EST: CAAGCAACGAGAACGCTATGCAACTTGGTGGATATCCTATTTAACAGGAG AAATCAGGATGATGCACCAGAAAACAACCCTAGACGCCTGCGTCCTGGGAAEST: gi|78075681|gb|DV504115.1|DV504115
genomic: CAAGCAACGAGAACGCTATGCAACTTGGTGGATATCCTATTTAACAGGAGgtgagcttta ... acattcacagAAATCAGGATGATGCACCAGAAAACAACCCTAGACGCCTGCGTCCTGGGAA
EST: CAAGCAACGAGAACGCTATGCAACTTGGTGGATATCCTATTTAACAGGAG AAATCAGGATGATGCACCAGAAAACAACCCTAGACGCCTGCGTCCTGGGAAEST: gi|101399011|gb|EB821378.1|EB821378
genomic: CAAGCAACGAGAACGCTATGCAACTTGGTGGATATCCTATTTAACAGGAGgtgagcttta ... acattcacagAAATCAGGATGATGCACCAGAAAACAACCCTAGACGCCTGCGTCCTGGGAA
EST: CAAGCAACGAGAACGCTATGCAACTTGGTGGATATCCTATTTAACAGGAG AAATCAGGATGATGCACCAGAAAACAACCCTAGACGCCTGCGTCCTGGGAAEST: gi|78082005|gb|DV510417.1|DV510417
genomic: CAAGCAACGAGAACGCTATGCAACTTGGTGGATATCCTATTTAACAGGAGgtgagcttta ... acattcacagAAATCAGGATGATGCACCAGAAAACAACCCTAGACGCCTGCGTCCTGGGAA
EST: CAAGCAACGAGAACGCTATGCAACTTGGTGGATATCCTATTTAACAGGAG AAATCAGGATGATGCACCAGAAAACAACCCTAGACGCCTGCGTCCTGGGAAEST: gi|71436246|gb|DR817296.1|DR817296
genomic: CAAGCAACGAGAACGCTATGCAACTTGGTGGATATCCTATTTAACAGGAGgtgagcttta ... acattcacagAAATCAGGATGATGCACCAGAAAACAACCCTAGACGCCTGCGTCCTGGGAA
EST: CAAGCAACGAGAACGCTATGCAACTTGGTGGATATCCTATTTAACAGGAG AAATCAGGATGATGCACCAGAAAACAACCCTAGACGCCTGCGTCCTGGGAAEST: gi|76289409|gb|DV028977.1|DV028977
genomic: CAAGCAACGAGAACGCTATGCAACTTGGTGGATATCCTATTTAACAGGAGgtgagcttta ... acattcacagAAATCAGGATGATGCACCAGAAAACAACCCTAGACGCCTGCGTCCTGGGAA
EST: CAAGCAACGAGAACGCTATGCAACTTGGTGGATATCCTATTTAACAGGAG AAATCAGGATGATGCACCAGAAAACAACCCTAGACGCCTGCGTCCTGGGAA
genomic: CAAGCAACGAGAACGCTATGCAACTTGGTGGATATCCTATTTAACAGGAGgtgagcttta ... acattcacagAAATCAGGATGATGCACCAGAAAACAACCCTAGACGCCTGCGTCCTGGGAA
tgactgcacatgtgggtctacaattaaatgcattattgtgacataacattcacagAAATCAGGATGATGCACCAGAAAACAACCCTAGACGCCTGCGTCCTGGGAAAGTATCTCCACGCCTTAGTGTTCCCAATCATATACAACGGCCTCCATAT
acataac putative branch site (score: 22)
aattaaatgcattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgtagaagttgttctcgtaaaagttatgggtacattatggctttgactgcacatgtgggtctacaattaaatgcattattgtgacataacattcacagAAATCAGGATGATGCACCAGAAAACAACCCTAGACGCCTGCGTCCTGGGAAAGTATCTCCACGCCTTAGTGTTCCCAATCATATACAACGGCCTCCATAT
- - - - - - - - - - - - - - - - - - - - - - - gactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - -catgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgcatt