1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaatattaacagccgcattactgaacaaacttttttttttgcgtgctccatgctgctctgctcgttcgtgggcaccgacgaccctgccgcgtgcgtcagaactcatggcctgatggattggcgcgcagGTGAGGAGGGAGAGGATCAGCGAGCGGATGCGGTACCTGCAGGAGCTGGTGCCCGGGTGCAGCAAGGTCACGGGCAAGGCCGGCATGCTCGACGAGATCA
species | Zea mays |
transcript | GRMZM2G101350_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACAGCCACAGCCTCGCCGAGCGG GTGAGGAGGGAGAGGATCAGCGAGCGGATGCGGTACCTGCAGGAGCTGGTGEST: gi|78090318|gb|DV518692.1|DV518692
genomic: ACAGCCACAGCCTCGCCGAGCGGgtaatattaa ... tggcgcgcagGTGAGGAGGGAGAGGATCAGCGAGCGGATGCGGTACCTGCAGGAGCTGGTG
EST: CCGCCGCGGCCAGGCCACGGACAGCCACAGCCTCGCCGAGCGG GTGAGGAGGGAGAGGATCAGCGAGCGGATGCGGTACCTGCAGGAGCTGGTGEST: gi|78120916|gb|DV539300.1|DV539300
genomic: CCGCCGCGGCCAGGCCACGGACAGCCACAGCCTCGCCGAGCGGgtaatattaa ... tggcgcgcagGTGAGGAGGGAGAGGATCAGCGAGCGGATGCGGTACCTGCAGGAGCTGGTG
EST: -CGGGCCCCGCCGCGGGCAGCCCACGGACAGCCACAGCCTCGCCGAGCGG GTGAGGAGGGAGAGGATCAGCGAGCGGATGCGGTACCTGCAGGAGCTGGTGEST: gi|71768486|gb|DR966423.1|DR966423
genomic: CCGGG-CCCGCCGCGGCCAGGCCACGGACAGCCACAGCCTCGCCGAGCGGgtaatattaa ... tggcgcgcagGTGAGGAGGGAGAGGATCAGCGAGCGGATGCGGTACCTGCAGGAGCTGGTG
EST: TCCGGGCCCGCCGCGGCCAGGCCACGGACAGCCACAGCCTCGCCGAGCGG GTGAGGAGGGAGAGGATCAGCGAGCGGATGCGGTACCTGCAGGAGCTGGTGEST: gi|76293282|gb|DV032850.1|DV032850
genomic: TCCGGGCCCGCCGCGGCCAGGCCACGGACAGCCACAGCCTCGCCGAGCGGgtaatattaa ... tggcgcgcagGTGAGGAGGGAGAGGATCAGCGAGCGGATGCGGTACCTGCAGGAGCTGGTG
EST: CGCCGCGGCCAGGCCACGGACAGCCACAGCCTCGCCGAGCGG GTGAGGAGGGAGAGGATCAGCGAGCGGATGCGGTACCTGCAGGAGCTGGTGEST: gi|71312226|gb|DR792635.1|DR792635
genomic: CGCCGCGGCCAGGCCACGGACAGCCACAGCCTCGCCGAGCGGgtaatattaa ... tggcgcgcagGTGAGGAGGGAGAGGATCAGCGAGCGGATGCGGTACCTGCAGGAGCTGGTG
EST: TCCGGGCCCGCCGCGGCCAGGCCACGGACAGCCACAGCCTCGCCGAGCGG GTGAGGAGGGAGAGGATCAGCGAGCGGATGCGGTACCTGCAGGAGCTGGTG
genomic: TCCGGGCCCGCCGCGGCCAGGCCACGGACAGCCACAGCCTCGCCGAGCGGgtaatattaa ... tggcgcgcagGTGAGGAGGGAGAGGATCAGCGAGCGGATGCGGTACCTGCAGGAGCTGGTG
accgacgaccctgccgcgtgcgtcagaactcatggcctgatggattggcgcgcagGTGAGGAGGGAGAGGATCAGCGAGCGGATGCGGTACCTGCAGGAGCTGGTGCCCGGGTGCAGCAAGGTCACGGGCAAGGCCGGCATGCTCGACGAGATCA
gcctgat putative branch site (score: 5)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatattaacagccgcattactgaacaaacttttttttttgcgtgctccatgctgctctgctcgttcgtgggcaccgacgaccctgccgcgtgcgtcagaactcatggcctgatggattggcgcgcagGTGAGGAGGGAGAGGATCAGCGAGCGGATGCGGTACCTGCAGGAGCTGGTGCCCGGGTGCAGCAAGGTCACGGGCAAGGCCGGCATGCTCGACGAGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA