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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtttgtatagttagtcacttcttctcttgaactaaaactttggcgaaaaaatgaccatctggttttccatgttcatctttcagCTGCTGTGCCAGAGAACAGTTCCACTGGTTACTTGTTGATTGCTACTAGTGGGGGCCTGAATCAGCAGCGCATAGGG

Basic information

species Zea mays
transcript GRMZM2G101181_T03
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101181_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os04g46570.1 (Oryza sativa), 3'ss of exon 2
gttagtttgtatagttagtcacttcttctcttg---aactaaaact---ttggcgaaaaaatgaccatc----tggttttccatgttcatctttcagCTGCTGTGCCAGAGAACAGTTCCACTGGTTACTTGTTGATTGCTACTAGTGGGGGCCTGAATCAGCAGCGCATAGGG
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gttagtttgcttattaaatcatcctcccttttggacaattataactagatgagtggaagaatatttaacacagtgattccatatgttcatctttcagCTGCTGTGCCGGAGAACAGTTCTACTGGTTACTTGCTGATTGGTACTAGCGGGGGACTAAATCAGCAGCGCATAGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211415882|gb|FL280505.1|FL280505
EST:     ATTCCAGCATGTACCTACCGGATGCAGCGAGAGAAGCGCGAGTTTCAGAT                         CTGCTGTGCCAGAG
genomic: ATTCCAGCATGTAC-TAC-GGATGCAGCGAGAGAAGCACGGGTTTCAGATgttagtttgt ... catctttcagCTGCTGTGCCAGAG
EST: gi|211413345|gb|FL280504.1|FL280504
EST:     GTATTCCAGCATGTACTACGGATGCAGCGAGAGAAGCACGGGTTTCAGAT                         CTGCTGTGCCAGAGAACAGTTCCACTGGTTACTTGTTGATTGCTACTAGTG
genomic: GTATTCCAGCATGTACTACGGATGCAGCGAGAGAAGCACGGGTTTCAGATgttagtttgt ... catctttcagCTGCTGTGCCAGAGAACAGTTCCACTGGTTACTTGTTGATTGCTACTAGTG
EST: gi|32865075|gb|CF004757.1|CF004757
EST:     GTATTCCAGCATGTACTACGGATGCAGCGAGAGAAGCGCGAGTTTCAGAT                         CTGCTGTGCCAGAGAACAGTTCCACTGGTTACTTGTTGATTGCTACTAGTG
genomic: GTATTCCAGCATGTACTACGGATGCAGCGAGAGAAGCACGGGTTTCAGATgttagtttgt ... catctttcagCTGCTGTGCCAGAGAACAGTTCCACTGGTTACTTGTTGATTGCTACTAGTG
EST: gi|67022216|gb|CO450965.1|CO450965
EST:     GTATTCCAGCATGTACTACGGATGCAGCGAGAGAAGCGCGAGTTTCAGAT                         CTGCTGTGCCAGAGAACAGTTCCACTGGTTACTTGTTGATTGCTACTAGTG
genomic: GTATTCCAGCATGTACTACGGATGCAGCGAGAGAAGCACGGGTTTCAGATgttagtttgt ... catctttcagCTGCTGTGCCAGAGAACAGTTCCACTGGTTACTTGTTGATTGCTACTAGTG
EST: gi|76282456|gb|DV022024.1|DV022024
EST:     GTATTCCAGCATGTACTACGGATGCAGCGAGAGAAGCACGGGTTTCAGAT                         CTGCTGTGCCAGAGAACAGTTCCACTGGTTACTTGTTGATTGCTACTAGTG
genomic: GTATTCCAGCATGTACTACGGATGCAGCGAGAGAAGCACGGGTTTCAGATgttagtttgt ... catctttcagCTGCTGTGCCAGAGAACAGTTCCACTGGTTACTTGTTGATTGCTACTAGTG
EST: gi|148935747|gb|EC879791.2|EC879791
EST:     GTATTCCAGCATGTACTACGGATGCAGCGAGAGAAGCACGGGTTTCAGAT                         CTGCTGTGCCAGAGAACAGTTCCACTGGTTACTTGTTGATTGCTACTAGTG
genomic: GTATTCCAGCATGTACTACGGATGCAGCGAGAGAAGCACGGGTTTCAGATgttagtttgt ... catctttcagCTGCTGTGCCAGAGAACAGTTCCACTGGTTACTTGTTGATTGCTACTAGTG
EST: gi|211415883|gb|FL280506.1|FL280506
EST:     GTATTCCAGCATGTACTACGGATGCAGCGAGAGAAGCGCGAGTTTCAGAT                         CTGCTGTGCCAGAGAACAGTTCCACTGGTTACTTGTTGATTGCTACTAGTG
genomic: GTATTCCAGCATGTACTACGGATGCAGCGAGAGAAGCACGGGTTTCAGATgttagtttgt ... catctttcagCTGCTGTGCCAGAGAACAGTTCCACTGGTTACTTGTTGATTGCTACTAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaactaaaactttggcgaaaaaatgaccatctggttttccatgttcatctttcagCTGCTGTGCCAGAGAACAGTTCCACTGGTTACTTGTTGATTGCTACTAGTGGGGGCCTGAATCAGCAGCGCATAGGG
 aactaaa  putative branch site (score: 2)
                                           ttcatctttc  putative PPT
                 aaaaaatga  TA-rich tract