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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgaccctgtctagttcgattaaagaaagtttcagtaattgtcttctttttttaggaaaacagattctctgtgcacaatgcatctttattatctagattgtaacctgttatttcaaggcctgtgatcatataacttgaccattgattgacgattgtctgttgcagTAAGGATTGGTACACTGTATGTGATCTCTGGTGTTGGTGGCAGCTTGCTGTCTTCTCTATTTATGGTGTCAAATATATCAGTCGGTGCTTCAGGTGCATT

Basic information

species Zea mays
transcript GRMZM2G100889_T01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101397128|gb|EB820488.1|EB820488
EST:     GTTGAGCCTCTTAATGATCGGAATCAGGCTCGAGAAGGAATTTGGTTTCA                         TAAGGATTGGTACACTGTATGTGATCTCTGGTGTTGGTGGCAGCTTGCTGT
genomic: GTTGAGCCTCTTAATGATCGGAATCAGGCTCGAGAAGGAATTTGGTTTCAgtaagtgacc ... tctgttgcagTAAGGATTGGTACACTGTATGTGATCTCTGGTGTTGGTGGCAGCTTGCTGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcaaggcctgtgatcatataacttgaccattgattgacgattgtctgttgcagTAAGGATTGGTACACTGTATGTGATCTCTGGTGTTGGTGGCAGCTTGCTGTCTTCTCTATTTATGGTGTCAAATATATCAGTCGGTGCTTCAGGTGCATT
                                 gattgac  putative branch site (score: 3)
              atcatataa  TA-rich tract