Sequence
atgc intronic sequence ATGC exonic sequencegtgagccttccgctcctccatatgcacgattcgattatattttccttgcatcaatagatggattctgacatcccgtaggttgattattgacttgttgatttttctttttgtgatgattgcgatttcctaacctgatttttctttgcacagGTAACTCACGAGGACTTCAATGAAGGAATCGTGCAGGTTCAGGCAAAGAAAAAGTCAAGCTTGAACTACTATGCTTAAGCTATATGCAAAAATGTCAGAA
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14242818|gb|BG840607.2|BG840607EST: CAGTCTGTGTAGAAGCTGGCATGCTCGCTCTACGGCGGGATGCTACAGAG GTAACTCACGAGGACTTCAATGAAGGAATCGCGCATGTTCAGGCAAAGAAA
genomic: CAGTCTGTGTAGAAGCTGGCATGCTCGCTCTACGGCGGGATGCTACAGAGgtgagccttc ... ctttgcacagGTAACTCACGAGGACTTCAATGAAGGAATCGTGCAGGTTCAGGCAAAGAAA
EST:
gi|14243285|gb|BG840998.2|BG840998EST: CAGTCTGTGTAGAAGCTGGCATGCTCGCTCTACGGCGGGATGCTACAGAG GTAACTCACGAGGACTTCAATGAAGGAATCGTGCAGGTTCAGGCAAAGAAA
genomic: CAGTCTGTGTAGAAGCTGGCATGCTCGCTCTACGGCGGGATGCTACAGAGgtgagccttc ... ctttgcacagGTAACTCACGAGGACTTCAATGAAGGAATCGTGCAGGTTCAGGCAAAGAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgatttttctttttgtgatgattgcgatttcctaacctgatttttctttgcacagGTAACTCACGAGGACTTCAATGAAGGAATCGTGCAGGTTCAGGCAAAGAAAAAGTCAAGCTTGAACTACTATGCTTAAGCTATATGCAAAAATGTCAGAA
cctgatttttcttt CT-rich tract
atttttcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagccttccgctcctccatatgcacgattcgattatattttccttgcatcaatagatggattctgacatcccgtaggttgattattgacttgttgatttttctttttgtgatgattgcgatttcctaacctgatttttctttgcacagGTAACTCACGAGGACTTCAATGAAGGAATCGTGCAGGTTCAGGCAAAGAAAAAGTCAAGCTTGAACTACTATGCTTAAGCTATATGCAAAAATGTCAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT