Sequence
atgc intronic sequence ATGC exonic sequence...ctatggaacatgtatcaatatttttattgtccatattatttgtatttgttatcctgtaccacacctacagggcatctccttatcactttcaattctgcagTCCGTTGTACGACTAGAAATCTATGGAAGCAGATGGCTTTTCATGGTGGATAAAGAGGATTAAATGTGACCTTGACTTATATGATGAATACGTATTGATC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G100730_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os07g43390.1 (Oryza sativa), 3'ss of exon 8
ctatggaacatgtatcaatatttttattgtccatattatttgtatttgttatcctgtaccacacctacagggcatctcct-tatcactttcaattctgcagTCCGTTGTACGACTAGAAATCTATGGAAGCAGATGGCTTTTCATGGTGGATAAAGAGGATTAAATGTGACCTTGACTTATATGATGAATAC-GTATTGATC
||| | | | |||| || | || | | | || | | |||| || | | |||| ||| | | |||||| |||||||||| |||| |||||||||||| ||| ||| |||||||||||| |||||||| ||| |||||| || |||||||| | | |||| ||
-----------gtaatcctttgctccctgtcaatgtgatcagga---aaaaagttgaatacaattaacagcatttcctttgtgaaacttgcaactttacagTCCATTGTACGACTGGAAAGCTATGGAAGCAGGTGGATTTGAATGGTGGATAAAAAGGATTAATCGTGCCCTTGATTTGTATGATGAGTTCCGTATAGAC- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgttatcctgtaccacacctacagggcatctccttatcactttcaattctgcagTCCGTTGTACGACTAGAAATCTATGGAAGCAGATGGCTTTTCATGGTGGATAAAGAGGATTAAATGTGACCTTGACTTATATGATGAATACGTATTGATC
tttcaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctatggaacatgtatcaatatttttattgtccatattatttgtatttgttatcctgtaccacacctacagggcatctccttatcactttcaattctgcagTCCGTTGTACGACTAGAAATCTATGGAAGCAGATGGCTTTTCATGGTGGATAAAGAGGATTAAATGTGACCTTGACTTATATGATGAATACGTATTGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - catgtat
- - - - - - - - - - - - - - - - - - - - tgtattt
- - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacctac