Sequence
atgc intronic sequence ATGC exonic sequencegtcggtcattttccactacacttaactcactaaaacaaaaacaaaaaaacttcatatatattctgctaaaacaaaactgttccttcattttcttcttggcagGTATTTGGCGCGCTTATCATAGCAAAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G100652_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os07g01030.1 (Oryza sativa), 3'ss of exon 3
gtcggtcattttccactacacttaactcactaaaacaaaaacaaaaaaacttcatatatattctgctaaaacaaaactgttccttcattttcttcttggcagGTATTTGGCGCGCTTATCATAGCAAAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAAT
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---------------------gtagcacaaaatttctactacatcaacactt----tgagttttaatatgccac--ttaccgcttttgtttccccaaaacagGTATTCGGTGCCCTAATAATTGCAAAGTTGCTCTGCGTCCCTCTAGTAATGTCGTACCACACCCATGTTCCAATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76282419|gb|DV021987.1|DV021987EST: TTGCTAGATTCAAGCCTGACATTATTCACGCCTCTTCACCTGGGATAATG GTATTTGGCGCGCTTATCATAGCAAAGTTGCTCTGCGTCCCTCTGGTAATG
genomic: TTGCTAGATTCAAGCCTGACATTATTCACGCCTCTTCACCTGGGATAATGgtcggtcatt ... ttcttggcagGTATTTGGCGCGCTTATCATAGCAAAGTTGCTCTGCGTCCCTCTGGTAATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacttcatatatattctgctaaaacaaaactgttccttcattttcttcttggcagGTATTTGGCGCGCTTATCATAGCAAAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAAT
tgctaaa putative branch site (score: 2)
ctgttccttcattttc putative PPT
atatatattct TA-rich tract