1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtcggtcattttccactacacttaactcactaaaacaaaaacaaaaaaacttcatatatattctgctaaaacaaaactgttccttcattttcttcttggcagGTATTTGGCGCGCTTATCATAGCAAAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAATGTGAGTTTCGACTGCTGCTCTCACAT
species | Zea mays |
transcript | GRMZM2G100652_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGCTAGATTCAAGCCTGACATTATTCACGCCTCTTCACCTGGGATAATG GTATTTGGCGCGCTTATCATAGCAAAGTTGCTCTGCGTCCCTCTGGTAATGEST: gi|94472299|gb|EB701257.1|EB701257
genomic: TTGCTAGATTCAAGCCTGACATTATTCACGCCTCTTCACCTGGGATAATGgtcggtcatt ... ttcttggcagGTATTTGGCGCGCTTATCATAGCAAAGTTGCTCTGCGTCCCTCTGGTAATG
EST: TTGCTAGATTCAAGCCTGACATTATTCACGCCTCTTCACCTGGGATAATG GTATTTGGCGCGCTTATCATAGCAAAGTTGCTCTGCGTCCCTCTGGTAATG
genomic: TTGCTAGATTCAAGCCTGACATTATTCACGCCTCTTCACCTGGGATAATGgtcggtcatt ... ttcttggcagGTATTTGGCGCGCTTATCATAGCAAAGTTGCTCTGCGTCCCTCTGGTAATG
aacttcatatatattctgctaaaacaaaactgttccttcattttcttcttggcagGTATTTGGCGCGCTTATCATAGCAAAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAATGTGAGTTTCGACTGCTGCTCTCACAT
tgctaaa putative branch site (score: 73)
ctgttccttcattttc putative PPT
atatatattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcggtcattttccactacacttaactcactaaaacaaaaacaaaaaaacttcatatatattctgctaaaacaaaactgttccttcattttcttcttggcagGTATTTGGCGCGCTTATCATAGCAAAGTTGCTCTGCGTCCCTCTGGTAATGTCATACCACACCCACGTTCCAATGTGAGTTTCGACTGCTGCTCTCACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT