1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tcattgtcctaaacgacaactaataggaaaccggagggagtacaccaaaattattatttgctggatatgtaatgcttttggttcttctgtttgtcttcagTGGGCTACCAAACCAAACCGTTTACTGAATCTTTTGTCGGGACAAGCGACAGATACCTACTTGATCAGGTGGCGAACATAGCTGAATCCTACAAAAATAA
species | Zea mays |
transcript | GRMZM2G100454_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGTTCAGGAATTTGGTCGAGCGAGGAGACATACTCCGCGCAAGGGATTCGCTGCTCGTGCTGGGCGTGCTTCACTCCATCACCCATCCAAEST: gi|76936659|gb|DV174827.1|DV174827
genomic: CGTTCAGGAATTTGGTCGAGCGAGGAGACATACTCCGCGCAAGGGATTCGCTGCTCGTGCTGGGCGTGCTTCACTCCATCACCCATCCAA
EST: CGTTCAGGAATTTGGTCGAGCGAGGAGACATACTCCGCGCAAGGGATTCGCTGCTCGTGCTGGGCGTGCTTCACTCCATCACCCATCCAA
genomic: CGTTCAGGAATTTGGTCGAGCGAGGAGACATACTCCGCGCAAGGGATTCGCTGCTCGTGCTGGGCGTGCTTCACTCCATCACCCATCCAA
caaaattattatttgctggatatgtaatgcttttggttcttctgtttgtcttcagTGGGCTACCAAACCAAACCGTTTACTGAATCTTTTGTCGGGACAAGCGACAGATACCTACTTGATCAGGTGGCGAACATAGCTGAATCCTACAAAAATAA
ttcttctgtttgtctt CT-rich tract
ttattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcattgtcctaaacgacaactaataggaaaccggagggagtacaccaaaattattatttgctggatatgtaatgcttttggttcttctgtttgtcttcagTGGGCTACCAAACCAAACCGTTTACTGAATCTTTTGTCGGGACAAGCGACAGATACCTACTTGATCAGGTGGCGAACATAGCTGAATCCTACAAAAATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - caactaa
- - - - - - - - - - - - - - - - - - - - - caccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atatgta