1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgatgatctgaggtttttgttgttgctgggatactgttatactaacacattttgggggttgtttattgcattctcatttgtaatggggactcttttgcagTGGGATGGGCACCATTTCGTTCCGGCTCTGCTGATGCAGAACCAGGAAGATGCCGCCGCACAGATGGCAAGAAGTGGCGGTGCTCTAGAGATGCTGTCGG
species | Zea mays |
transcript | GRMZM2G099862_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCCTATCAAAAGAAGCCTCAATCCATGGAGCAGCCTTGGCTCCAGCTCAT TGGGATGGGCACCATTTCGTTCCGGCTCTGCTGATGCAGAACCAGGAAGATEST: gi|76017158|gb|DT944328.1|DT944328
genomic: CCCTATCAAAAGAAGCCTCAATCCATGGAGCAGCCTTGGCTCCAGCTCATgtaactctcc ... tcttttgcagTGGGATGGGCACCATTTCGTTCCGGCTCTGCTGATGCAGAACCAGGAAGAT
EST: CCCTATCAAAAGAAGCCTCAATCCATGGAGCAGCCTTGGCTCCAGCTCAT TGGGATGGGCACCATTTCGTTCCGGCTCTGCTGATGCAGAACCAGGAAGATEST: gi|71320270|gb|DR796883.1|DR796883
genomic: CCCTATCAAAAGAAGCCTCAATCCATGGAGCAGCCTTGGCTCCAGCTCATgtaactctcc ... tcttttgcagTGGGATGGGCACCATTTCGTTCCGGCTCTGCTGATGCAGAACCAGGAAGAT
EST: CCCTATCAAAAGAAGCCTCAATCCATGGAGCAGCCTTGGCTCCAGCTCAT TGGGATGGGCACCATTTCGTTCCGGCTCTGCTGATGCAGAACCAGGAAGAT
genomic: CCCTATCAAAAGAAGCCTCAATCCATGGAGCAGCCTTGGCTCCAGCTCATgtaactctcc ... tcttttgcagTGGGATGGGCACCATTTCGTTCCGGCTCTGCTGATGCAGAACCAGGAAGAT
cacattttgggggttgtttattgcattctcatttgtaatggggactcttttgcagTGGGATGGGCACCATTTCGTTCCGGCTCTGCTGATGCAGAACCAGGAAGATGCCGCCGCACAGATGGCAAGAAGTGGCGGTGCTCTAGAGATGCTGTCGG
ctcttttgc CT-rich tract
ttgtttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatgatctgaggtttttgttgttgctgggatactgttatactaacacattttgggggttgtttattgcattctcatttgtaatggggactcttttgcagTGGGATGGGCACCATTTCGTTCCGGCTCTGCTGATGCAGAACCAGGAAGATGCCGCCGCACAGATGGCAAGAAGTGGCGGTGCTCTAGAGATGCTGTCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG