Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaagggaatttctgttccaaagttcttacgaaatatttatgaatgctgcagtgtgatggactaattgtagtgcgtaactgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGACACTGACTCTCCCATGCGGTATGTCGATATCGGCATCCCAGCCAACAACA

Basic information

species Zea mays
transcript GRMZM2G099657_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G099657_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g08440.1 (Oryza sativa), 3'ss of exon 2
gtgaagggaatttctgttccaaagttct-tacgaaatatttatgaatgctgcagtgtgatggactaattgtagtgcgtaactgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGACACTGACTCTCCCATGCGGTATGTCGATATCGGCATCCCAGCCAACAACA
|||||    ||  |  |  ||  ||  |         | ||  | |   |   || |  ||  |   || |  ||  | | ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || || || |||||||||||||||||||||||||| ||||||||||
gtgaaaatgatcaccatgtcacggtagtgcgttggtgaattgggtacagtattgtttactgatcgtgttatcctgaatta-tgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGACACCGATTCCCCAATGCGGTATGTCGATATCGGCATCCCGGCCAACAACA

upper sequence: GRMZM2G099657_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA15G42150.1 (Glycine max), 3'ss of exon 2
-------------------------------------------------------------------------------------gtgaagggaatttctgttccaaagttcttacgaaatatttatgaatgctgcagtgtgatggactaattgtagtgcgt------------aactgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGACACTGACTCTCCCATGCGGTATGTCGATATCGGCATCCCAGCCAACAACA
                                                                                     ||     || | |  |||  ||| || | ||  | || |||    || |    ||||   | ||      | |  ||            |  ||| ||||||| |||||||||  |||||| || || || || || ||||| || ||||||||||| ||||| ||||||||||| ||| | || || || ||||| || |
gttattacccctttagaagttagaaccagagagtatttaaggtgttttcaggagttatatagttcaactcttcaccgtcaaggatgtttgttgagtgttggtttgaaatttgtgac--agtaattaaccttgttattttgtgtctgtcttgccacaatttgtcttatgttattgatttgtgtgcagCCTATCAAGGAGGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGCGACACTGATTCTCCAATGCGGTATGTTGATGTTGGGATTCCTGCCAATAATA

upper sequence: GRMZM2G099657_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT1G72370.2 (Arabidopsis thaliana), 3'ss of exon 2
gtgaagggaatttctgttccaaagttcttacgaaatatttatgaatgctgcagtgtgatggactaattgtagtgcgtaactgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGACACTGACTCTCCCATGCGGTATGTCGATATCGGCATCCCAGCCAACAACA
     |  || |  |  |   |      ||| |   ||| || |||| |    ||| || || ||| |||  || ||   |||| |||||| ||||||||   |||| |||| ||||| || | |||||| ||||| ||||| |||||||| ||| | | ||| || || || ||||||||||||||||
-----gtaaactcttcatatgattcatatactagtgattgattaatgatttt-tgttattga-taaatgtcttgtgtg--tgtt-gcagCCTATCAAGGAAGGTGCTTTGGGAAACATTCCAATCATTGCTTTCTGTGACACAGACTCTCCAATGAGATTTGTTGACATTGGTATCCCAGCCAACAACA

upper sequence: GRMZM2G099657_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv09s0002g00610.t01 (Vitis vinifera), 3'ss of exon 2
-------gtgaagggaatttctgttc-caaagttcttacgaaatatttatgaatgctgcagtgtga----tggactaattgtagtgcgtaactgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGACACTGACTCTCCCATGCGGTATGTCGATATCGGCATCCCAGCCAACAACA
       ||  |   ||||| | ||   | |||   |  |      |||||| |  |  |||        |  ||| ||  |      ||||||||| ||||| || |||||  |||| || || ||||| || || ||||| ||||| |||||||| || || ||||||||||| || || || ||||||||||| ||||
tattttggttcatctaatttatctttgtatagtgtatgagtttgtgttatgagttatttagtccaggatttttacttatcatcaca-ataactgttttcagCCTATTAAGGAAGCTGCACTAGGAAACATTCCAACTATTGCTTTCTGTGACACTGATTCCCCAATGCGGTATGTTGACATTGGTATCCCAGCCAATAACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19351060|gb|BM895592.1|BM895592
EST:     CAGCGAGCCTCGCCTGCGTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: CAGCGAGCCTCGCCTGC-TCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|56382275|gb|CV984944.1|CV984944
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|148967244|gb|EE018445.2|EE018445
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|148999543|gb|EE036515.2|EE036515
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|22542941|gb|BU093379.1|BU093379
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|211400874|gb|FL300021.1|FL300021
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|32850450|gb|CD990131.1|CD990131
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|211518211|gb|FL037248.1|FL037248
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|148953131|gb|EE152612.2|EE152612
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|148943861|gb|EC888941.2|EC888941
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|28910007|gb|CB331210.1|CB331210
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|211518208|gb|FL037245.1|FL037245
EST:     CGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: CGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|71446342|gb|DR827392.1|DR827392
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|149005055|gb|EE039580.2|EE039580
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|149110237|gb|EE190301.2|EE190301
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|211197207|gb|FL300008.1|FL300008
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGG
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGG
EST: gi|148946515|gb|EC891827.2|EC891827
EST:     AGGACTGGCCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: AGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|33093830|gb|CF053824.1|CF053824
EST:     TCAGCGAGCCTCGCCTGCTCATCCCTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACCATCCCGACCATTGCCTTCTGCGA
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAA-CATCCCGACCATTGCCTTCTGCGA
EST: gi|28987464|gb|CB351648.1|CB351648
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|27522059|gb|CA989165.1|CA989165
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|211403420|gb|FL300033.1|FL300033
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|67010589|gb|CO439338.1|CO439338
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|211197211|gb|FL300012.1|FL300012
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACA
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACA
EST: gi|211400869|gb|FL300016.1|FL300016
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAAATCA-GGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGA
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAA-TCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGA
EST: gi|67010613|gb|CO439362.1|CO439362
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|27522024|gb|CA989130.1|CA989130
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATT
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATT
EST: gi|31359080|gb|CD443437.1|CD443437
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|67032609|gb|CO461358.1|CO461358
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|211400871|gb|FL300018.1|FL300018
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|149089704|gb|EE178966.2|EE178966
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|148956831|gb|EC902738.2|EC902738
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|5268560|gb|AI770524.1|AI770524
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|71431963|gb|DR813013.1|DR813013
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|31355946|gb|CD440303.1|CD440303
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|22935905|gb|BU572180.1|BU572180
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|30306903|gb|CD001576.1|CD001576
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATT
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATT
EST: gi|23357479|gb|BU645128.1|BU645128
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|71448210|gb|DR829260.1|DR829260
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|60354763|gb|DN221736.1|DN221736
EST:     ACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: ACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|71431962|gb|DR813012.1|DR813012
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|9028567|gb|BE238607.1|BE238607
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGNCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|148946516|gb|EC891828.2|EC891828
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|148956964|gb|EC902906.2|EC902906
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|31363450|gb|CD447807.1|CD447807
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|20300382|gb|BQ163325.1|BQ163325
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|78082756|gb|DV511149.1|DV511149
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|67035411|gb|CO463944.1|CO463944
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|67026689|gb|CO455438.1|CO455438
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|67031238|gb|CO459987.1|CO459987
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|60341245|gb|DN208218.1|DN208218
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|67034831|gb|CO463364.1|CO463364
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|149060857|gb|EE157310.2|EE157310
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|116828171|gb|EC872137.1|EC872137
EST:     AGCGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: AGCG--AGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|28909492|gb|CB331844.1|CB331844
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|148960810|gb|EE011477.2|EE011477
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|29947038|gb|CB816451.1|CB816451
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATT
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATT
EST: gi|33104249|gb|CF064209.1|CF064209
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACCATCCCGACCATTGCCTTCTGCGA
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAA-CATCCCGACCATTGCCTTCTGCGA
EST: gi|211400882|gb|FL300029.1|FL300029
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|148937803|gb|EC882018.2|EC882018
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|211400872|gb|FL300019.1|FL300019
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|76019320|gb|DT946490.1|DT946490
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|71442804|gb|DR823854.1|DR823854
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|148973477|gb|EE024575.2|EE024575
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|67017288|gb|CO446037.1|CO446037
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|18965031|gb|BM661353.1|BM661353
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|31356818|gb|CD441175.1|CD441175
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|33095804|gb|CF055798.1|CF055798
EST:     TCAGTGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|149001171|gb|EE038436.2|EE038436
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|19436149|gb|BM952559.1|BM952559
EST:     TCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|31360418|gb|CD444775.1|CD444775
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|29947085|gb|CB816474.1|CB816474
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
EST: gi|31354422|gb|CD438779.1|CD438779
EST:     TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAG                         CCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC
genomic: TCAGCGAGCCTCGCCTGCTCATCCTTACTGACCCAAGGACTGACCATCAGgtgaagggaa ... ctgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatttatgaatgctgcagtgtgatggactaattgtagtgcgtaactgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGACACTGACTCTCCCATGCGGTATGTCGATATCGGCATCCCAGCCAACAACA
                             taattgta  TA-rich tract