Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caggtgtgcagccaaacaagccttcagggttattattccaaagtgactaccatgttatacttcagattgtggtgattatgtaattatatatttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGACCTTTTTGTTTGTTACCGATCAGAAGAGGATCTGGAGGTTGCCCCTTTC

Basic information

species Zea mays
transcript GRMZM2G099547_T03
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G099547_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os07g19470.1 (Oryza sativa), 3'ss of exon 2
---cag-gtgtgcagc-caaacaagcctt--cagggttattatt-ccaaagtgactaccatgttatacttcagattgtggtgattatgtaattatatatttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGACCTTTTTGTTTGTTACCGATCAGAAGAGGATCTGGAGGTTGCCCCTTTC
   ||   | | ||   |  | | ||| |  | || | ||| |    ||  | | ||| | |||  ||| || | | || ||||| | ||||          |||||| || ||||| ||||||||||||||||| || ||||| ||| ||||||| | |||||| |||||||||||||||||||||||  ||||| | || || |||
catcaccatttacaattcttatatgccatatctggatcattttggttaatataattactaggttgcactccaaactttgatgattctctaatg--------tatgcagGGGAGAAGGGAAGCTTGAAAAGCAGTTCCGTATGAGTTGTTTGGGATGCGGCCTTTTCGTTTGTTACCGATCAGAAGAGGAGTTGGAGCTAGCTCCATTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211228685|gb|FK986413.1|FK986413
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTTCG
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCG
EST: gi|211224564|gb|FK986388.1|FK986388
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAWAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: gi|211222495|gb|FK986365.1|FK986365
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: gi|71303364|gb|DR787782.1|DR787782
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: gi|211224563|gb|FK986387.1|FK986387
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCCTGAAAAGCAGTTTCG
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCG
EST: gi|211224553|gb|FK986377.1|FK986377
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGG
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGG
EST: gi|211228687|gb|FK986415.1|FK986415
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGA
EST: gi|211224561|gb|FK986385.1|FK986385
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: gi|32788063|gb|CD940299.1|CD940299
EST:     TAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
genomic: TAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: gi|211226629|gb|FK986401.1|FK986401
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGA
EST: gi|211222503|gb|FK986373.1|FK986373
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGA
EST: gi|211222504|gb|FK986374.1|FK986374
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: gi|15199102|gb|BI423657.1|BI423657
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: gi|94477735|gb|EB706693.1|EB706693
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: gi|211224565|gb|FK986389.1|FK986389
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: gi|211222502|gb|FK986372.1|FK986372
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAA
EST: gi|101392939|gb|EB818400.1|EB818400
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: gi|78180203|gb|DV550576.1|DV550576
EST:     AATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
genomic: AATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: gi|211224554|gb|FK986378.1|FK986378
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: gi|12045537|gb|BF727676.1|BF727676
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: gi|211226620|gb|FK986392.1|FK986392
EST:     CATCTTTCAAGGCTAAATGTTAAGTAGGCAGGAAAAGTA-TGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTG
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTG
EST: gi|9731972|gb|BE510724.1|BE510724
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: gi|149104413|gb|EE289858.2|EE289858
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: gi|211224559|gb|FK986383.1|FK986383
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: gi|71433975|gb|DR815025.1|DR815025
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: gi|211226630|gb|FK986402.1|FK986402
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACA                         TGGTGAAGGAAAGCTTGAAAA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAA
EST: gi|211228689|gb|FK986417.1|FK986417
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTGGAAAA-CAGTTTCGCA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCA
EST: gi|211228684|gb|FK986412.1|FK986412
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAA
EST: gi|211226624|gb|FK986396.1|FK986396
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTA-TGTTGAAACG                         TGGTGAAGGAA-GCTTGAAAAGCAGTTTCGCATGAGCTGTG
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTG
EST: gi|211224557|gb|FK986381.1|FK986381
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGT
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGT
EST: gi|211228686|gb|FK986414.1|FK986414
EST:     TCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTTGAAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTG
genomic: TCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTT-GAAA-CGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTG
EST: gi|211228679|gb|FK986407.1|FK986407
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTT-CGCATGAGCTGTGTGGGATGTGA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: gi|71450211|gb|DR831261.1|DR831261
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: gi|211224560|gb|FK986384.1|FK986384
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: gi|50325142|gb|CO520268.1|CO520268
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: gi|84351516|gb|DW245921.1|DW245921
EST:     TCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
genomic: TCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: gi|60337078|gb|DN204051.1|DN204051
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: gi|211226633|gb|FK986405.1|FK986405
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTG
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTG
EST: gi|211226626|gb|FK986398.1|FK986398
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: gi|211228688|gb|FK986416.1|FK986416
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: gi|211224555|gb|FK986379.1|FK986379
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: gi|19822251|gb|BQ048275.1|BQ048275
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: gi|17929991|gb|BM266951.1|BM266951
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTNCGCATGAGCTGTGTGGGATGTG
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTG
EST: gi|211226631|gb|FK986403.1|FK986403
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAASCAGTTTCGCATGAGCTGTGTGGGATGTGA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: gi|71435787|gb|DR816837.1|DR816837
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: gi|211228681|gb|FK986409.1|FK986409
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TG---AAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTG
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTG
EST: gi|211226623|gb|FK986395.1|FK986395
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGAT
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGAT
EST: gi|211224558|gb|FK986382.1|FK986382
EST:     CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG                         TGGTGAAGGAAAGCTTG
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actaccatgttatacttcagattgtggtgattatgtaattatatatttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGACCTTTTTGTTTGTTACCGATCAGAAGAGGATCTGGAGGTTGCCCCTTTC
                           tgattatgtaattata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
caggtgtgcagccaaacaagccttcagggttattattccaaagtgactaccatgttatacttcagattgtggtgattatgtaattatatatttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGACCTTTTTGTTTGTTACCGATCAGAAGAGGATCTGGAGGTTGCCCCTTTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG