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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctctccaaaccactgtcttttggtagcttgtattacttaagtaatgtagaagtttggcccctcagaaatagtgtgtttgacttgaatgatcttgttgaagGTTTTTCGGTTTTTACCGGGAGGTCTTTGGTGGAAGGGTGCCCTTGGTGGACCTGGTGACCATTTGGTGAAGGGTGCCCTTGGTGTAATGTTATTGACTG

Basic information

species Zea mays
transcript GRMZM2G099317_T04
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148954856|gb|EC900331.2|EC900331
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         GTTTTTCGGTTTTTACCGGGAGGTCTTTGGTGGAAGGGTGCCCTTGGTGGA
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... cttgttgaagGTTTTTCGGTTTTTACCGGGAGGTCTTTGGTGGAAGGGTGCCCTTGGTGGA
EST: gi|14245050|gb|BG873632.1|BG873632
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         GTTTTTCGGTTTTTACCGGGAGGTCTTTGGTGGAAGGGTGCCCTTGGTGGA
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... cttgttgaagGTTTTTCGGTTTTTACCGGGAGGTCTTTGGTGGAAGGGTGCCCTTGGTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagaagtttggcccctcagaaatagtgtgtttgacttgaatgatcttgttgaagGTTTTTCGGTTTTTACCGGGAGGTCTTTGGTGGAAGGGTGCCCTTGGTGGACCTGGTGACCATTTGGTGAAGGGTGCCCTTGGTGTAATGTTATTGACTG
                             gtttgac  putative branch site (score: 4)
                                            tcttgtt  putative PPT
                  agaaata  TA-rich tract