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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgacatactatctcatgtatgaataaggatatgcccatagccacttgtgcatatgggtgtgtatgagtactaaatctaaccacttgtgtgtactttcagGGTCATGAAGACAGATACACCATATACGTGCATGCATCAAGAGATATACCGAGTCATTCAAGTCCAATATTCGCTGGCAGGGATATTCGAAGCGAAAAG

Basic information

species Zea mays
transcript GRMZM2G099255_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G099255_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os06g48700.1 (Oryza sativa), 3'ss of exon 2
--------ttgacatactatctcatgtatgaataaggatatgcccatagccacttgtgcatatgggtgtgtatgagtactaaatctaaccacttgtgtgtactttcagGGTCATGAAGACAGATACACCATATACGTGCATGCATCAAGAGATATACCGAGTCATTCAAGTCCAATATTCGCTGGCAGGGATATTCGAAGCGAAAAG
        || |    | |||||||| | |    | ||||||| ||      ||||   |  ||   ||| ||| ||||| |||| |   ||||| |||||||||||||| |||||||||||||| |||||||| || |||||||||||||| |  ||   |||  | ||||| |||||   |||||| ||||||||||| ||||||
ggaagagcttcatgc-caatctcatgaaagttataagatatgctca------cttgctgaggtgcacgtggatg-gtactgaatccagatacttgggtgtactttcagGGGCATGAAGACAGATATACCATATATGTACATGCATCAAGAGAAAGGCCTGTTCACGCTAGTCCGATATTTAATGGCAGAGATATTCGAAGTGAAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149106922|gb|EE188823.2|EE188823
EST:     TAACACCCAGTTTATTGCCATTTGAGAAGCTATGGGAAAAATTCTTCATG                         GGTCATGAAGACAGATACACCATATACGTGCATGCATCAAGAGATATACCG
genomic: TAACACCCAGTTTATTGCCATTTGAGAAGCTATGGGAAAAATTCTTCATGgtatgatttt ... gtactttcagGGTCATGAAGACAGATACACCATATACGTGCATGCATCAAGAGATATACCG
EST: gi|31355133|gb|CD439490.1|CD439490
EST:     TAACACCCAGTTTATTGCCATTTGAGAAGCTATGGGAAAAATTCTTCATG                         GGTCATGAAGACAGATACACCATATACGTGCATGCATCAAGAGATATACCG
genomic: TAACACCCAGTTTATTGCCATTTGAGAAGCTATGGGAAAAATTCTTCATGgtatgatttt ... gtactttcagGGTCATGAAGACAGATACACCATATACGTGCATGCATCAAGAGATATACCG
EST: gi|78093093|gb|DV521467.1|DV521467
EST:     AAAAATTCTTCATG                         GGTCATGAAGACAGATACACCATATACGTGCATGCATCAAGAGATATACCG
genomic: AAAAATTCTTCATGgtatgatttt ... gtactttcagGGTCATGAAGACAGATACACCATATACGTGCATGCATCAAGAGATATACCG
EST: gi|71442863|gb|DR823913.1|DR823913
EST:     TAACACCCAGTTTATTGCCATTTGAGAAGCTATGGGAAAAATTCTTCATG                         GGTCATGAAGACAGATACACCATATACGTGCATGCATCAAGAGATATACCG
genomic: TAACACCCAGTTTATTGCCATTTGAGAAGCTATGGGAAAAATTCTTCATGgtatgatttt ... gtactttcagGGTCATGAAGACAGATACACCATATACGTGCATGCATCAAGAGATATACCG
EST: gi|71767367|gb|DR965304.1|DR965304
EST:     TAACACCCAGTTTATTGCCATTTGAAAAGCTATGGGAAAAATTCTTCATG                         GGTCATGAAGACAGATACACCATATACGTGCATGCATCAAGAGATATACCG
genomic: TAACACCCAGTTTATTGCCATTTGAGAAGCTATGGGAAAAATTCTTCATGgtatgatttt ... gtactttcagGGTCATGAAGACAGATACACCATATACGTGCATGCATCAAGAGATATACCG
EST: gi|91050289|gb|EB160707.1|EB160707
EST:     TAACACCCAGTTTATTGCCATTTGAGAAGCTATGGGAAAAATTCTTCATG                         GGTCATGAAGACAGATACACCATATACGTGCATGCATCAAGAGATATACCG
genomic: TAACACCCAGTTTATTGCCATTTGAGAAGCTATGGGAAAAATTCTTCATGgtatgatttt ... gtactttcagGGTCATGAAGACAGATACACCATATACGTGCATGCATCAAGAGATATACCG
EST: gi|31353293|gb|CD437650.1|CD437650
EST:     TAACACCCAGTTTATTGCCATTTGAGAAGCTATGGGAAAAATTCTTCATG                         GGTCATGAAGACAGATACACCATATACGTGCATGCATCAAGAGATATACCG
genomic: TAACACCCAGTTTATTGCCATTTGAGAAGCTATGGGAAAAATTCTTCATGgtatgatttt ... gtactttcagGGTCATGAAGACAGATACACCATATACGTGCATGCATCAAGAGATATACCG
EST: gi|71774867|gb|DR972745.1|DR972745
EST:     ATTTGAGAAGCTATGGGAAAAAATCTTTCATG                         GGTCATGAAGACAGATACACCATATACGTGCATGCATCAAGAGATATACC
genomic: ATTTGAGAAGCTATGGGAAAAATTC-TTCATGgtatgatttt ... gtactttcagGGTCATGAAGACAGATACACCATATACGTGCATGCATCAAGAGATATACC
EST: gi|101388831|gb|EB816397.1|EB816397
EST:     TAACACCCAGTTTATTGCCATTTGAGAAGCTATGGGAAAAATTCTTCATG                         GGTCATGAAGACAGATACACCATATACGTGCATGCATCAAGAGATATACCG
genomic: TAACACCCAGTTTATTGCCATTTGAGAAGCTATGGGAAAAATTCTTCATGgtatgatttt ... gtactttcagGGTCATGAAGACAGATACACCATATACGTGCATGCATCAAGAGATATACCG
EST: gi|71774868|gb|DR972746.1|DR972746
EST:     TAACACCCAGTTTATTGCCATTTGAGAAGCTATGGGAAAAATTCTTCATG                         GGTCATGAAGACAGATACACCATATACGTGCATGCATCAAGAGATATACCG
genomic: TAACACCCAGTTTATTGCCATTTGAGAAGCTATGGGAAAAATTCTTCATGgtatgatttt ... gtactttcagGGTCATGAAGACAGATACACCATATACGTGCATGCATCAAGAGATATACCG
EST: gi|78105513|gb|DV523931.1|DV523931
EST:     TAACACCCAGTTTATTGCCATTTGAGAAGCTATGGGAAAAATTCTTCATG                         GGTCATGAAGACAGATACACCATATACGTGCATGCATCAAGAGATATACCG
genomic: TAACACCCAGTTTATTGCCATTTGAGAAGCTATGGGAAAAATTCTTCATGgtatgatttt ... gtactttcagGGTCATGAAGACAGATACACCATATACGTGCATGCATCAAGAGATATACCG
EST: gi|78077574|gb|DV506008.1|DV506008
EST:     TAACACCCAGTTTATTGCCATTTGAGAAGCTATGGGAAAAATTCTTCATG                         GGTCATGAAGACAGATACACCATATACGTGCATGCATCAAGAGATATACCG
genomic: TAACACCCAGTTTATTGCCATTTGAGAAGCTATGGGAAAAATTCTTCATGgtatgatttt ... gtactttcagGGTCATGAAGACAGATACACCATATACGTGCATGCATCAAGAGATATACCG
EST: gi|76912823|gb|DV164898.1|DV164898
EST:     TAACACCCAGTTTATTGCCATTTGAGAAGCTATGGGAAAAATTCTTCATG                         GGTCATGAAGACAGATACACCATATACGTGCATGCATCAAGAGATATACCG
genomic: TAACACCCAGTTTATTGCCATTTGAGAAGCTATGGGAAAAATTCTTCATGgtatgatttt ... gtactttcagGGTCATGAAGACAGATACACCATATACGTGCATGCATCAAGAGATATACCG
EST: gi|78090002|gb|DV518376.1|DV518376
EST:     TAACACCCAGTTTATTGCCATTTGAGAAGCTATGGGAAAAATTCTTCATG                         GGTCATGAAGACAGATACACCATATACGTGCA
genomic: TAACACCCAGTTTATTGCCATTTGAGAAGCTATGGGAAAAATTCTTCATGgtatgatttt ... gtactttcagGGTCATGAAGACAGATACACCATATACGTGCA
EST: gi|149082890|gb|EE172121.2|EE172121
EST:     TAACACCCAGTTTATTGCCATTTGAGAAGCTATGGGAAAAATTCTTCATG                         GGTCATGAAGACAGATACACCATATACGTGCA
genomic: TAACACCCAGTTTATTGCCATTTGAGAAGCTATGGGAAAAATTCTTCATGgtatgatttt ... gtactttcagGGTCATGAAGACAGATACACCATATACGTGCA
EST: gi|76018437|gb|DT945607.1|DT945607
EST:     TAACACCCAGTTTATTGCCATTTGAGAAGCTATGGGAAAAATTCTTCATG                         GGTCATGAAGACAGATACACCATATACGTGCATGCATCAAGAGATATACCG
genomic: TAACACCCAGTTTATTGCCATTTGAGAAGCTATGGGAAAAATTCTTCATGgtatgatttt ... gtactttcagGGTCATGAAGACAGATACACCATATACGTGCATGCATCAAGAGATATACCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgcatatgggtgtgtatgagtactaaatctaaccacttgtgtgtactttcagGGTCATGAAGACAGATACACCATATACGTGCATGCATCAAGAGATATACCGAGTCATTCAAGTCCAATATTCGCTGGCAGGGATATTCGAAGCGAAAAG
                                              tactttc  CT-rich tract
                          taaatctaa  TA-rich tract