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...tacttctctatggttcttgagatctaattattgcaatgtcttctgggtggactaaatatttttcatgcttgatgcgttggtttcatgtgttgatctacagGCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG
species | Zea mays |
transcript | GRMZM2G098815_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAAT GCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTAEST: gi|50336738|gb|CO531864.1|CO531864
genomic: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAATgtaagtggta ... tgatctacagGCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTA
EST: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAAT GCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTAEST: gi|211052429|gb|FL214540.1|FL214540
genomic: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAATgtaagtggta ... tgatctacagGCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTA
EST: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAAT GCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTEST: gi|71449728|gb|DR830778.1|DR830778
genomic: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAATgtaagtggta ... tgatctacagGCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGT
EST: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAAT GCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTAEST: gi|149082609|gb|EE171808.2|EE171808
genomic: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAATgtaagtggta ... tgatctacagGCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTA
EST: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAAT GCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTAEST: gi|89253146|gb|DY624932.1|DY624932
genomic: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAATgtaagtggta ... tgatctacagGCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTA
EST: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAAT GCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTAEST: gi|211052431|gb|FL214542.1|FL214542
genomic: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAATgtaagtggta ... tgatctacagGCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTA
EST: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAAT GCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTAEST: gi|211052434|gb|FL214545.1|FL214545
genomic: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAATgtaagtggta ... tgatctacagGCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTA
EST: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAAT GCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTAEST: gi|149005336|gb|EE039887.2|EE039887
genomic: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAATgtaagtggta ... tgatctacagGCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTA
EST: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAAT GCAGCCTGGGATGAAACGTCACA-AAACTCAGAACEST: gi|211052435|gb|FL214546.1|FL214546
genomic: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAATgtaagtggta ... tgatctacagGCAGCCTGTGATGAAACGTCAGAGAAA-TCAGAAC
EST: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAAT GCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTEST: gi|211052430|gb|FL214541.1|FL214541
genomic: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAATgtaagtggta ... tgatctacagGCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTT
EST: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAAT GCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTAEST: gi|211052428|gb|FL214539.1|FL214539
genomic: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAATgtaagtggta ... tgatctacagGCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTA
EST: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAWT GCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTTCAACTA
genomic: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAATgtaagtggta ... tgatctacagGCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTA
ggtggactaaatatttttcatgcttgatgcgttggtttcatgtgttgatctacagGCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG
actaaatatttttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacttctctatggttcttgagatctaattattgcaatgtcttctgggtggactaaatatttttcatgcttgatgcgttggtttcatgtgttgatctacagGCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTATTATTGACTTCATCTAGTGGAAATAGTAATAACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA