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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gacgcttccatcgatggaagaagagacgtttcgtgctgaagcttcggtgctagctctcttctacactaactgctagctctgcttggtaactctttcgcagTCACTGATGATTGCGGCGGTTCCGAACGTCATGGGCTGGCTCGCGATCTCCCTGGCAAGG

Basic information

species Zea mays
transcript GRMZM2G098679_T01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148953879|gb|EC899257.2|EC899257
EST:     TCGGGGCGATCGCCAGCGGCCAGATGGCCAAGTACGTTGGCCGCAGAGGG                         TCACTGATGATTGCGGCGGTTCCGAACGTCATGGGCTGGCTCGCGATCTCC
genomic: TCGGGGCGATCGCCAGCGGCCAGATGGCCAAGTACGTTGGCCGCAGAGGGgtgagaaccg ... tctttcgcagTCACTGATGATTGCGGCGGTTCCGAACGTCATGGGCTGGCTCGCGATCTCC
EST: gi|149102088|gb|EE188063.2|EE188063
EST:     TCGGGGCGATCGCCAGCGGCCAGATGGCCAAGTACGTTGGCCGCAGAGGG                         TCACTGATGATTGCGGCGGTTCCGAACGTCATGGGCTGGCTCGCGATCTCC
genomic: TCGGGGCGATCGCCAGCGGCCAGATGGCCAAGTACGTTGGCCGCAGAGGGgtgagaaccg ... tctttcgcagTCACTGATGATTGCGGCGGTTCCGAACGTCATGGGCTGGCTCGCGATCTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtgctagctctcttctacactaactgctagctctgcttggtaactctttcgcagTCACTGATGATTGCGGCGGTTCCGAACGTCATGGGCTGGCTCGCGATCTCCCTGGCAAGG
                                            ctctttcgc  CT-rich tract