1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacttatatgtcctttatttaatctgatattttcttccgttttgaggatttgctttatttatttgaacttgtattctaatgtgcagAGGCTTGTGAGGGATTTATATGTGATGCTTGATAAAGTAAATTCTGAGGAAGCACCTCTTGACTTGAAGGTTCCAGAAACTTTTGATGAATTTATCTGGG
species | Zea mays |
transcript | GRMZM2G098434_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAAGACGTTTAGGTCCGCGCCTTCTTGGTAGGGGAAACGATGGTTCCATG AGGCTTGTGAGGGATTTATATGTGATGCTTGATAAAGTAAATTCTGAGGAAEST: gi|148947655|gb|EC893135.2|EC893135
genomic: GAAGACGTTTAGGTCCGCGCCTTCTTGGTAGGGGAAACGATGGTTCCATGgtacttatat ... taatgtgcagAGGCTTGTGAGGGATTTATATGTGATGCTTGATAAAGTAAATTCTGAGGAA
EST: GAAGACGTTTAGGTCCGCGCCTTCTTGGTAGGGGAAACGATGGTTCCATG AGGCTTGTGAGGGATTTATATGTGATGCTTGEST: gi|148966012|gb|EE016944.2|EE016944
genomic: GAAGACGTTTAGGTCCGCGCCTTCTTGGTAGGGGAAACGATGGTTCCATGgtacttatat ... taatgtgcagAGGCTTGTGAGGGATTTATATGTGATGCTTG
EST: AAGACGTTTAGGTCCGCGCCTTTCT-GGTAGGGGAAACGATGGTTCCATG AGGCTTGTGAGGGATTTATATGTGATGCTTEST: gi|76286619|gb|DV026187.1|DV026187
genomic: AAGACGTTTAGGTCCGCGCCTT-CTTGGTAGGGGAAACGATGGTTCCATGgtacttatat ... taatgtgcagAGGCTTGTGAGGGATTTATATGTGATGCTT
EST: GAAGACGTTTAGGTCCGCGCCTTCTTGGTAGGGGAAACGATGGTTCCATG AGGCTTGTGAGGGATTTATATGTGATGCTTGATAAAGTAAATTCTGAGGAAEST: gi|148956132|gb|EC901900.2|EC901900
genomic: GAAGACGTTTAGGTCCGCGCCTTCTTGGTAGGGGAAACGATGGTTCCATGgtacttatat ... taatgtgcagAGGCTTGTGAGGGATTTATATGTGATGCTTGATAAAGTAAATTCTGAGGAA
EST: GAAGACGTTTAGGTCCGCGCCTTCTTGGTAGGGGAAACGATGGTTCCATG AGGCTTGTGAGGGATTTATATGTGATGCTTGATAAAGTAAATTCTGAGGAAEST: gi|148995862|gb|EE035098.2|EE035098
genomic: GAAGACGTTTAGGTCCGCGCCTTCTTGGTAGGGGAAACGATGGTTCCATGgtacttatat ... taatgtgcagAGGCTTGTGAGGGATTTATATGTGATGCTTGATAAAGTAAATTCTGAGGAA
EST: AAGACGTTTAGGTCCGCGCCCTTCT-GGTAGGGGAAACGATGGTTCCATG AGGCTTGTGAGGGATTTATATGTGATGCTTGATAAAGTAAATTCTGAEST: gi|148965944|gb|EE016860.2|EE016860
genomic: AAGACGTTTAGGTCCGCGCC-TTCTTGGTAGGGGAAACGATGGTTCCATGgtacttatat ... taatgtgcagAGGCTTGTGAGGGATTTATATGTGATGCTTGATAAAGTAAATTCTGA
EST: GAAGACGTTTAGGTCCGCGCCTTCTTGGTAGGGGAAACGATGGTTCCATG AGGCTTGTGAGGGATTTATATGTGATGC
genomic: GAAGACGTTTAGGTCCGCGCCTTCTTGGTAGGGGAAACGATGGTTCCATGgtacttatat ... taatgtgcagAGGCTTGTGAGGGATTTATATGTGATGC
ttcttccgttttgaggatttgctttatttatttgaacttgtattctaatgtgcagAGGCTTGTGAGGGATTTATATGTGATGCTTGATAAAGTAAATTCTGAGGAAGCACCTCTTGACTTGAAGGTTCCAGAAACTTTTGATGAATTTATCTGGG
ttctaat putative branch site (score: 43)
tttatttatttgaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttatatgtcctttatttaatctgatattttcttccgttttgaggatttgctttatttatttgaacttgtattctaatgtgcagAGGCTTGTGAGGGATTTATATGTGATGCTTGATAAAGTAAATTCTGAGGAAGCACCTCTTGACTTGAAGGTTCCAGAAACTTTTGATGAATTTATCTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG