Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcagacactagaaaaatcggcttggaaagcctgtgaattggtttgccaagtatccttactgaacttttcaaacctgtatgttacctatctacttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTTCTATTCAAGGGAAGTACAAAGCCCCATCCATCTTACAGTCGACACCGGC

Basic information

species Zea mays
transcript GRMZM2G098153_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G098153_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os05g01450.1 (Oryza sativa), 3'ss of exon 2
--tcagacactagaaaaatcggcttggaaagcctgtgaattggtttgccaagtatccttactgaacttttcaaacctgta-tgttacctatctacttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTTCTATTCAAGGGAAGTACAAAGCCCCATCCATCTTACAGTCGACACCGGC
  | |||   |      ||     |     |  |       |  | |  ||| | | || |  ||  |     | | ||| |       ||||   | || |||||||||||||| || |||||||||||||||||||||||||||||||| || || ||||| |||||||| |||||||| ||||| || || ||||| || 
acttaga-gttgctgttataactgtaatttgttttctttcagagtaggaaagaaacatttcaaaaaatgaatgagcagtaatacagtacatctg--tatgcagGTTCTCGACTGGCTTCGGTGTTTCTGGGGGAAGTACGCTTATCCATGATTTTTACTCAAGAGAAGTACAGAGCCCCATTCATCTCACTGTTGACACTGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211168080|gb|FL298958.1|FL298958
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|211169766|gb|FL298977.1|FL298977
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTTGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|76286915|gb|DV026483.1|DV026483
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|211166407|gb|FL298947.1|FL298947
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|67015095|gb|CO443844.1|CO443844
EST:     CTCGCACTAGTAA-GTGAACCCCAAGGAA-TCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: CTCGCACCAG-AAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|19272401|gb|BM888657.1|BM888657
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|211168084|gb|FL298962.1|FL298962
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGG
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGG
EST: gi|211169774|gb|FL298985.1|FL298985
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTC
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|211168086|gb|FL298964.1|FL298964
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|211168087|gb|FL298965.1|FL298965
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAANTCATCGTCGGATG                         GTTCTCGACTGGATTTNGTGTTTCTGGGG-AATTACGCTTATCCAT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCAT
EST: gi|211168089|gb|FL298967.1|FL298967
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|211169770|gb|FL298981.1|FL298981
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|211169765|gb|FL298976.1|FL298976
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|32918964|gb|CF023776.1|CF023776
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|211166416|gb|FL298956.1|FL298956
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGG
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGG
EST: gi|22491340|gb|BU051263.1|BU051263
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|211168083|gb|FL298961.1|FL298961
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|211166410|gb|FL298950.1|FL298950
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAG
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAG
EST: gi|211166409|gb|FL298949.1|FL298949
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|211169771|gb|FL298982.1|FL298982
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|211169769|gb|FL298980.1|FL298980
EST:     ATGTACGCYTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|211166412|gb|FL298952.1|FL298952
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|74240762|gb|DT648676.1|DT648676
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|211168088|gb|FL298966.1|FL298966
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|211169768|gb|FL298979.1|FL298979
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|87152453|gb|DY397242.1|DY397242
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|211168090|gb|FL298968.1|FL298968
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|211166413|gb|FL298953.1|FL298953
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCTTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|211166406|gb|FL298946.1|FL298946
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|149112627|gb|EE295476.2|EE295476
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCCAGGAAGTCCTCGTCGGATG                         GTTCTCGACTGGATTTGGGGTTTCTGGGGG
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGG
EST: gi|116817472|gb|EC860326.1|EC860326
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGA
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGA
EST: gi|211168091|gb|FL298969.1|FL298969
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGC
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGC
EST: gi|211168081|gb|FL298959.1|FL298959
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|101384134|gb|EB814117.1|EB814117
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|211168094|gb|FL298972.1|FL298972
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGNNGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|211169773|gb|FL298984.1|FL298984
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|93015004|gb|EB640524.1|EB640524
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|211169763|gb|FL298974.1|FL298974
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|76284328|gb|DV023896.1|DV023896
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|101384548|gb|EB814319.1|EB814319
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|211168093|gb|FL298971.1|FL298971
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCTTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|211166417|gb|FL298957.1|FL298957
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|211168092|gb|FL298970.1|FL298970
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
EST: gi|67011620|gb|CO440369.1|CO440369
EST:     ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATG                         GTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT
genomic: ATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 111

GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTTCTATTCAAGGGAAGTACAAAGCCCCATCCATCTTACAGTCGACACCGGC


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 78

GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTTCTATTCAAGGGAAGTACAAAGCCCCATCCATCTTACAGTCGACACCGGC


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 92

GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTTCTATTCAAGGGAAGTACAAAGCCCCATCCATCTTACAGTCGACACCGGC


Block sizes: 45 (upstream exon), 48 (downstream exon)
Score: 125

GTCGCCATCGACATCGACTACCACCATAACATGTACGCCTCGCACCAGAAGGTGAACCCCAAGGAAGTCATCGTCGGATGgtgagcaacc ... acttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTTCTATTCAAGGGAAGTACAAAGCCCCATCCATCTTACAGTCGACACCGGC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaagtatccttactgaacttttcaaacctgtatgttacctatctacttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTTCTATTCAAGGGAAGTACAAAGCCCCATCCATCTTACAGTCGACACCGGC
       tccttac  putative branch site (score: 125)
                                          tctactt  putative PPT
                   ttttcaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcagacactagaaaaatcggcttggaaagcctgtgaattggtttgccaagtatccttactgaacttttcaaacctgtatgttacctatctacttgtgtagGTTCTCGACTGGATTTGGTGTTTCTGGGGGAAGTACGCTTATCCATGAGTTCTATTCAAGGGAAGTACAAAGCCCCATCCATCTTACAGTCGACACCGGC

-cagacac
- - - - -agaaaaa
- - - - - - - - -cggcttg
- - - - - - - - - - - - - aagcctg
- - - - - - - - - - - - - - - - -tgaattg
- - - - - - - - - - - - - - - - - - - - - -tgccaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtatg