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...tatatcttactttcaccagaagtagcattttctacataatgtttcttttttttttagttaacttgaccttttgtttcctctgctgctttggttactgcagGTGCGGCATCCAAATATCTTATCCTTTTTACACAGTACTGAAGCAGAAGTTGCGGATGGACCTGCCATCAAACACACGATTTATATTGTAACAGAGCCTG
species | Zea mays |
transcript | GRMZM2G098078_T04 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGACAGACACATGGTTGCTGGCCGTAATGGTGTTAAGAGATTACGAACG GTGCGGCATCCAAATATCTTATCCTTTTTACACAGTACTGAAGCAGAAGTTEST: gi|211424858|gb|FL220406.1|FL220406
genomic: AGGACAGACACATGGTTGCTGGCCGTAATGGTGTTAAGAGATTACGAACGgtaagctaac ... gttactgcagGTGCGGCATCCAAATATCTTATCCTTTTTACACAGTACTGAAGCAGAAGTT
EST: AGGACAGACACATGGTTGCTGGCCGTAATGGTGTTAAGAGATTACGAACG GTGCGGCATCCAAATATCTTATCCTTTTTACACAGTACTGAAGCAGAAGTTEST: gi|76289771|gb|DV029339.1|DV029339
genomic: AGGACAGACACATGGTTGCTGGCCGTAATGGTGTTAAGAGATTACGAACGgtaagctaac ... gttactgcagGTGCGGCATCCAAATATCTTATCCTTTTTACACAGTACTGAAGCAGAAGTT
EST: AGGACAGACACATGGTTGCTGGCCGTAATGGTGTTAAGAGATTACGAACG GTGCGGCATCCAAATATCTTATCCTTTTTACACAGTACTGAAGCAGAAGTTEST: gi|211352110|gb|FL449964.1|FL449964
genomic: AGGACAGACACATGGTTGCTGGCCGTAATGGTGTTAAGAGATTACGAACGgtaagctaac ... gttactgcagGTGCGGCATCCAAATATCTTATCCTTTTTACACAGTACTGAAGCAGAAGTT
EST: AGGACAGACACATGGTTGCTGGCCGTAATGGTGTTAAGAGATTACGAACG GTGCGGCATCCAAATATCTTATCCTTTTTACACAGTACTGAAGCAGAAGTT
genomic: AGGACAGACACATGGTTGCTGGCCGTAATGGTGTTAAGAGATTACGAACGgtaagctaac ... gttactgcagGTGCGGCATCCAAATATCTTATCCTTTTTACACAGTACTGAAGCAGAAGTT
ttttttttttagttaacttgaccttttgtttcctctgctgctttggttactgcagGTGCGGCATCCAAATATCTTATCCTTTTTACACAGTACTGAAGCAGAAGTTGCGGATGGACCTGCCATCAAACACACGATTTATATTGTAACAGAGCCTG
tttttagttaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatatcttactttcaccagaagtagcattttctacataatgtttcttttttttttagttaacttgaccttttgtttcctctgctgctttggttactgcagGTGCGGCATCCAAATATCTTATCCTTTTTACACAGTACTGAAGCAGAAGTTGCGGATGGACCTGCCATCAAACACACGATTTATATTGTAACAGAGCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - -caccaga
- - - - - - - - - - agtagca
- - - - - - - - - - - - - - - - - - - -tgtttct