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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgcagataatgttcatgtgcacttaactttctactacaaatttaaatggcagatggtgtttagtccctgctgatctctcgctttgactaccttatacagTTGACCCTGAAGATATTCCACTGGAGAAGGTTCAAGTTAAATCCTCAGGACATGTTATGCCATATGTTGGTGTTGCTTGTTTGGGGGCTATTCTGTTTGG

Basic information

species Zea mays
transcript GRMZM2G098011_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G098011_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g04190.2 (Oryza sativa), 3'ss of exon 2
ttgcagataatgttcatgtgcacttaactttctactacaaatttaaatggcagatggtgtttag---tccctgctgatctc--tcgctttgactacct-tatacagTTGACCCTGAAGATATTCCACTGGAGAAGGTTCAAGTTAAATCCTCAGGACATGTTATGCCATATGTTGGTGTTGCTTGTTTGGGGGCTATTCTGTTTGG
      ||| || ||||| || | |  |||  |  | |||    |||  | | |||  |||||    |  ||||||||||   |  ||   ||||  | | | ||||||| ||||| ||||||||| ||||||||||||||| |||||| || |||  |||| |||||||||| || ||||||||||||||||||||| | |||||
----ttatagtgctcatgcgctcatg-cttagttttgcaagccaaaactgga-atgtagtttaactatatctgctgatcttgatttctaatactatttatttccagTTGATCCTGAGGATATTCCATTGGAGAAGGTTCAAGCTAAATCTTCTGGAAGTGTTCTGCCATATGTGGGCGTTGCTTGTTTGGGGGCTATTTTATTTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211244569|gb|FL131418.1|FL131418
EST:     GCTCTTCCGCGCGAGCCCGCGCTATGGGCGCTTGCAAGCCACGGCCGCAG                         TTGACCCTGAAGATATTCCACTGGAGAAGGTTCAAGCTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTATGGGCGCTTGCAAGCCACGGCCGCAGgtgcgtttcg ... ccttatacagTTGACCCTGAAGATATTCCACTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|211244564|gb|FL131413.1|FL131413
EST:     GCTCTTCCGCGCGAGCCCGCGCTATGGGCGCTTGCAAGCCACGGCCGCAG                         TTGACCCTGAAGATATTCCACTGGAGAAGGTTCAAGCTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTATGGGCGCTTGCAAGCCACGGCCGCAGgtgcgtttcg ... ccttatacagTTGACCCTGAAGATATTCCACTGGAGAAGGTTCAAGTTAAATCCTCAGGAC
EST: gi|211244571|gb|FL131420.1|FL131420
EST:     GCTCTTCCGCGCGAGCCCGCGCTATGGGCGCTTGCAAGCCACGGCCGCAG                         TTGACCCTGAAGATATTCCACTGGAGAAGGT-CAAGCTAAATCCTCAGGAC
genomic: GCTCTTCCGCGCGAGCCCGCGCTATGGGCGCTTGCAAGCCACGGCCGCAGgtgcgtttcg ... ccttatacagTTGACCCTGAAGATATTCCACTGGAGAAGGTTCAAGTTAAATCCTCAGGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatggcagatggtgtttagtccctgctgatctctcgctttgactaccttatacagTTGACCCTGAAGATATTCCACTGGAGAAGGTTCAAGTTAAATCCTCAGGACATGTTATGCCATATGTTGGTGTTGCTTGTTTGGGGGCTATTCTGTTTGG
                                          ctacctt  CT-rich tract
                                               ttataca  TA-rich tract