Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cacctttctaatagaattgcaatggtcgacacacatactgtttgattcgatgggtaagtaagattgcgaatgaatttattgcctctacttctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG

Basic information

species Zea mays
transcript GRMZM2G096962_T01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13178137|gb|BG349395.1|BG349395
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|13490830|gb|BG517594.1|BG517594
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|211322847|gb|FL127468.1|FL127468
EST:     TTCCTCCTTCCCAAGGGCAARGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGC
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGC
EST: gi|211087730|gb|FL054352.1|FL054352
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|14645994|gb|BI180183.1|BI180183
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|13316131|gb|BG410578.1|BG410578
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|211090167|gb|FL054356.1|FL054356
EST:     TTCATCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAAAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|211087722|gb|FL054344.1|FL054344
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|211518614|gb|FL054337.1|FL054337
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAAAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|32830089|gb|CD969767.1|CD969767
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAAAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|32860092|gb|CD999773.1|CD999773
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAAAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|211087731|gb|FL054353.1|FL054353
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAAAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|33099864|gb|CF059824.1|CF059824
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAAAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|32829981|gb|CD969659.1|CD969659
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAAAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|32829709|gb|CD969387.1|CD969387
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGACTAGAAGCTGAGAAAAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|211322849|gb|FL127470.1|FL127470
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAAAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|148974517|gb|EE025302.2|EE025302
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|211087725|gb|FL054347.1|FL054347
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAAAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|149089632|gb|EE178886.2|EE178886
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|211087721|gb|FL054343.1|FL054343
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAAAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|31355725|gb|CD440082.1|CD440082
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAAAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|211090166|gb|FL054355.1|FL054355
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAAAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|211087718|gb|FL054340.1|FL054340
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|211090165|gb|FL054354.1|FL054354
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|15208882|gb|BI430766.1|BI430766
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|149010029|gb|EE041834.2|EE041834
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|16926981|gb|BM080049.1|BM080049
EST:     CCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
genomic: CCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|83279377|gb|DV943385.1|DV943385
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|32858543|gb|CD998224.1|CD998224
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAAAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|148985808|gb|EE029766.2|EE029766
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|211087728|gb|FL054350.1|FL054350
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAAAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|13178451|gb|BG349709.1|BG349709
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|211087719|gb|FL054341.1|FL054341
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|32848919|gb|CD988600.1|CD988600
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAAAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|13516046|gb|BG518322.1|BG518322
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|211518613|gb|FL054336.1|FL054336
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|2615445|gb|AA661454.1|AA661454
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCA
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCA
EST: gi|32829797|gb|CD969475.1|CD969475
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAAAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|211087717|gb|FL054339.1|FL054339
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGGTAAA
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGGGTAAA
EST: gi|15053619|gb|BI359164.1|BI359164
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|211087726|gb|FL054348.1|FL054348
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAAAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|148967374|gb|EE018593.2|EE018593
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|32829763|gb|CD969441.1|CD969441
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAAAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|211087727|gb|FL054349.1|FL054349
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAAAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|5761970|gb|AI967018.1|AI967018
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|211322850|gb|FL127471.1|FL127471
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAAAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|211090169|gb|FL054358.1|FL054358
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAAAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|211087729|gb|FL054351.1|FL054351
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCT
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCT
EST: gi|32849657|gb|CD989338.1|CD989338
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAAAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|211518615|gb|FL054338.1|FL054338
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAAAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
EST: gi|211087724|gb|FL054346.1|FL054346
EST:     TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAA                         GGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAAAAGAAGCGG
genomic: TTCCTCCTTCCCAAGGGCAAGGCTACACTTCTGACCCCAGAAGTCCTCAAgtaattgcta ... ctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcgatgggtaagtaagattgcgaatgaatttattgcctctacttctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG
                             tttattgcctctactt  CT-rich tract
                       aatgaatttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cacctttctaatagaattgcaatggtcgacacacatactgtttgattcgatgggtaagtaagattgcgaatgaatttattgcctctacttctcttcgcagGGAAATGCAGCTGGAGCAGGAGAGAATAGAAGCTGAGAAGAAGCGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC