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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctatcatgcatctggtatatattatatgactttcttcaatgcagtgccactattcagtgccattgtttgacatctatatggtcttgttgctcactccagGTGCCAGAATTAAAAATTTGCAAGAGAGGAACCAGTCAAGTTACATCGGTAGCCTTGCACGCCGGGTGCGAGACCTAGAATCACCAAGCCAAACCTCTCT

Basic information

species Zea mays
transcript GRMZM2G096764_T02
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93016229|gb|EB641749.1|EB641749
EST:     ACTAGTTGCTTCCTCCCCTTTGGGCGCTTTTCAAAGTGACATCACTGCAG                         GTGCCAGAATTAAAAATTTGCAAGAGAGGAACCAGTCAAGTTACATCGGTA
genomic: ACTAGTTGCTTCCTCCCCTTTGGGCGCTTTTCAAAGTGACATCACTGCAGgtacacggag ... ctcactccagGTGCCAGAATTAAAAATTTGCAAGAGAGGAACCAGTCAAGTTACATCGGTA
EST: gi|50326807|gb|CO521933.1|CO521933
EST:     ACTAGTTGCTTCCTCCCCTTTGGGCGCTTTTCAAAGTGACATCACTGCAG                         GTGCCAGAATTAAAAATTTGCAAGAGAGGAACCAGTCAAGTTACATCGGTA
genomic: ACTAGTTGCTTCCTCCCCTTTGGGCGCTTTTCAAAGTGACATCACTGCAGgtacacggag ... ctcactccagGTGCCAGAATTAAAAATTTGCAAGAGAGGAACCAGTCAAGTTACATCGGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgccactattcagtgccattgtttgacatctatatggtcttgttgctcactccagGTGCCAGAATTAAAAATTTGCAAGAGAGGAACCAGTCAAGTTACATCGGTAGCCTTGCACGCCGGGTGCGAGACCTAGAATCACCAAGCCAAACCTCTCT
                                           tgctcac  putative branch site (score: 2)
                                             ctcactcc  CT-rich tract
                           atctatat  TA-rich tract