1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gctatcatgcatctggtatatattatatgactttcttcaatgcagtgccactattcagtgccattgtttgacatctatatggtcttgttgctcactccagGTGCCAGAATTAAAAATTTGCAAGAGAGGAACCAGTCAAGTTACATCGGTAGCCTTGCACGCCGGGTGCGAGACCTAGAATCACCAAGCCAAACCTCTCT
species | Zea mays |
transcript | GRMZM2G096764_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACTAGTTGCTTCCTCCCCTTTGGGCGCTTTTCAAAGTGACATCACTGCAG GTGCCAGAATTAAAAATTTGCAAGAGAGGAACCAGTCAAGTTACATCGGTAEST: gi|149080324|gb|EE169345.2|EE169345
genomic: ACTAGTTGCTTCCTCCCCTTTGGGCGCTTTTCAAAGTGACATCACTGCAGgtacacggag ... ctcactccagGTGCCAGAATTAAAAATTTGCAAGAGAGGAACCAGTCAAGTTACATCGGTA
EST: ACTAGTTGCTTCCTCCCCTTTGGGCGCTTTTCAAAGTGACATCACTGCAG GTGCCAGAATTAAAAATTTGCAAGAGAGGAACCAGTCAAGTTACATCGGTAEST: gi|50326807|gb|CO521933.1|CO521933
genomic: ACTAGTTGCTTCCTCCCCTTTGGGCGCTTTTCAAAGTGACATCACTGCAGgtacacggag ... ctcactccagGTGCCAGAATTAAAAATTTGCAAGAGAGGAACCAGTCAAGTTACATCGGTA
EST: ACTAGTTGCTTCCTCCCCTTTGGGCGCTTTTCAAAGTGACATCACTGCAG GTGCCAGAATTAAAAATTTGCAAGAGAGGAACCAGTCAAGTTACATCGGTA
genomic: ACTAGTTGCTTCCTCCCCTTTGGGCGCTTTTCAAAGTGACATCACTGCAGgtacacggag ... ctcactccagGTGCCAGAATTAAAAATTTGCAAGAGAGGAACCAGTCAAGTTACATCGGTA
tgccactattcagtgccattgtttgacatctatatggtcttgttgctcactccagGTGCCAGAATTAAAAATTTGCAAGAGAGGAACCAGTCAAGTTACATCGGTAGCCTTGCACGCCGGGTGCGAGACCTAGAATCACCAAGCCAAACCTCTCT
tgctcac putative branch site (score: 63)
ctcactcc CT-rich tract
atctatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctatcatgcatctggtatatattatatgactttcttcaatgcagtgccactattcagtgccattgtttgacatctatatggtcttgttgctcactccagGTGCCAGAATTAAAAATTTGCAAGAGAGGAACCAGTCAAGTTACATCGGTAGCCTTGCACGCCGGGTGCGAGACCTAGAATCACCAAGCCAAACCTCTCT
- - tcatgca
- - - - - - - - - - - - - - - - - - -caatgca
- - - - - - - - - - - - - - - - - - - - - - - gccacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgccatt