1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacttttctgctttaatatagctcatgcaatatgatttattttaacacatatttgaaatagaactggattgtgcatattttgtaaagtgtttgttctacattttgtaattcgtattattcatttttcctttagtttttctctttctacaactcctatctctttacaatcaaatttcagATGTGATAGATATTGGTATAAAAGATAAAAACTAGAATGCTATGTCTGTCAAAGGAGCTTTCTTCAGTTCAG
species | Zea mays |
transcript | GRMZM2G096647_T08 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAAGTGTGTGTTTATGGTTCCTGAGTCAGATGATCTTTCTTCAGTTTTAG ATGTGATAGATATTGGTATAAAAGATAAAAACTAGAATGCTATGTCTGTCAEST: gi|50331285|gb|CO526411.1|CO526411
genomic: AAAGTGTGTGTTTATGGTTCCTGAGTCAGATGATCTTTCTTCAGTTTTAGgtacttttct ... caaatttcagATGTGATAGATATTGGTATAAAAGATAAAAACTAGAATGCTATGTCTGTCA
EST: AAAGTGTGTGTTTATGGTTCCTGAGTCAGATGATCTTTCTTCAGTTTTAG ATGTGATAGATATTGGTATAAAAGATAAAAACTAGAATGCTATGTCTGTCAEST: gi|50338074|gb|CO533200.1|CO533200
genomic: AAAGTGTGTGTTTATGGTTCCTGAGTCAGATGATCTTTCTTCAGTTTTAGgtacttttct ... caaatttcagATGTGATAGATATTGGTATAAAAGATAAAAACTAGAATGCTATGTCTGTCA
EST: AAAGTGTGTGTTTATGGTTCCTGAGTCAGATGATCTTTCTTCAGTTTTAG ATGTGATAGATATTGGTATAAAAGATAAAAACTAGAATGCTATGTCTGTCAEST: gi|71445259|gb|DR826309.1|DR826309
genomic: AAAGTGTGTGTTTATGGTTCCTGAGTCAGATGATCTTTCTTCAGTTTTAGgtacttttct ... caaatttcagATGTGATAGATATTGGTATAAAAGATAAAAACTAGAATGCTATGTCTGTCA
EST: AAAGTGTGTGTTTATGGTTCCTGAGTCAGATGATCTTTCTTCAGTTTTAG ATGTGATAGATATTGGTATAAAAGATAAAAACTAGAATGCTATGTCTGTCA
genomic: AAAGTGTGTGTTTATGGTTCCTGAGTCAGATGATCTTTCTTCAGTTTTAGgtacttttct ... caaatttcagATGTGATAGATATTGGTATAAAAGATAAAAACTAGAATGCTATGTCTGTCA
tttcctttagtttttctctttctacaactcctatctctttacaatcaaatttcagATGTGATAGATATTGGTATAAAAGATAAAAACTAGAATGCTATGTCTGTCAAAGGAGCTTTCTTCAGTTCAG
tttacaatcaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttttctgctttaatatagctcatgcaatatgatttattttaacacatatttgaaatagaactggattgtgcatattttgtaaagtgtttgttctacattttgtaattcgtattattcatttttcctttagtttttctctttctacaactcctatctctttacaatcaaatttcagATGTGATAGATATTGGTATAAAAGATAAAAACTAGAATGCTATGTCTGTCAAAGGAGCTTTCTTCAGTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT