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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtaaattctagcttggagatcatcctgtttctctcttgcctctttgttgacattgccaagttgaaaaataatgctcattaactattttgtcaatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGAAAATGCTATTTTTACCATTCCTCCAGAGCTGGCTTATGGAGCATCTGG

Basic information

species Zea mays
transcript GRMZM2G096585_T05
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G096585_T05 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os08g41390.2 (Oryza sativa), 3'ss of exon 2
gtaaattctagcttggagatcatcctgtttctctcttgcctctt-tgttgacattgccaagttgaaaaat------aatgctcattaactattttgtcaa----tgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGAAAATGCTATTTTTACCATTCCTCCAGAGCTGGCTTATGGAGCATCTGG
           |       |  |  | | |      ||| | |  || ||  ||||| || |  |    |      ||||||||  | ||||||  | ||    |  ||||||||||||||||| |||||||||| ||| |||||||||||||||||||| ||||||||| |||| ||||||||||| ||  |||| ||||| | ||||||
-----------cacaagcttttttttctctgctatgtgcttgtgatggtgggattgcaaaatctatttttctgttaaatgctcaccagctatttcttgaacttgtatccagGTCAAGTGATAAAAGGTTGGGATCTAGGTATCAAGACCATGAAGAAAGGCGAAAATGCTGTTTTCACCATTCCTCCTGATTTGGCCTATGGTGAATCTGG

upper sequence: GRMZM2G096585_T05 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA08G11240.1 (Glycine max), 3'ss of exon 1
--gtaaattctagcttggagatcatcctgtttctctcttgcctctttgttgacattgccaagttgaaaaataatgctcattaact----attttgtcaatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGAAAATGCTATTTTTACCATTCCTCCAGAGCTGGCTTATGGAGCATCTGG
   | | |  ||   |||| || |   |    ||    ||  |  | | ||| || |   | |  ||  ||| |  ||| |   |    | ||    |||||  ||| |||||||| ||||| |||||| |||| ||||| |||||||||||||| || |||||  |||| || || || |||||  ||||||||||||  || ||
aatttattgttatactggacatgaaaattaaacttaagtgattaat-gatga-atggatgaat--aactatagtattcaatgttttgtgacttgactaatgc--agGGCAAGTGATCAAGGGATGGGATGAAGGTATCAAAACCATGAAGAAAGGTGAGAATGCCCTTTTCACAATACCCCCAGAATTGGCTTATGGAGAGTCAGG

upper sequence: GRMZM2G096585_T05 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA05G28260.1 (Glycine max), 3'ss of exon 1
--gtaaattctagcttggagatcatcctgtttctctcttgcctctttgttgac-attgccaagttgaaaaat--aatgctcattaactattttgtcaatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGAAAATGCTATTTTTACCATTCCTCCAGAGCTGGCTTATGGAGCATCTGG
   | |    ||   |||| || |   |    ||    ||  |  |  |  |  | ||   |  |  |  ||  |||| |   | |||   |  | |||||  ||| |||||||||||||| |||||| |||| ||||| |||||||||||||| || |||||  |||| || || || || ||  ||||||||||||  |||||
aatttatccttatactggacatgaaaattaaacttaagtgattaataatgaatgaatgaataactatagtattcaatgttttgtgact---tgattaatgc--agGGCAAGTGATAAAGGGATGGGATGAAGGTATCAAAACCATGAAGAAAGGTGAGAATGCCCTTTTCACAATACCCCCGGAATTGGCTTATGGAGAGTCTGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211432103|gb|FL195660.1|FL195660
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTNGACAAG                         GTCAAGTGATAAAGGGTTCGGATCAAG
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAG
EST: gi|33091370|gb|CF051364.1|CF051364
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: gi|211437291|gb|FL195677.1|FL195677
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: gi|148938868|gb|EC883219.2|EC883219
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: gi|211434699|gb|FL195668.1|FL195668
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: gi|6626419|gb|AW257951.1|AW257951
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: gi|149088396|gb|EE177498.2|EE177498
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: gi|211439890|gb|FL195693.1|FL195693
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAA
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAA
EST: gi|31910479|gb|CD651444.1|CD651444
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: gi|211437303|gb|FL195689.1|FL195689
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: gi|211432089|gb|FL195646.1|FL195646
EST:     CGACTCAAGCCGTGATCGTGGATAACCCTTCAAGTTCAAGCTTSGACAAG                         GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: gi|211437295|gb|FL195681.1|FL195681
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: gi|211429500|gb|FL195643.1|FL195643
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTSGACAAG                         GTCAAGTGATAAAGG
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGG
EST: gi|211437302|gb|FL195688.1|FL195688
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGA
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGG-TTGGGATCAAGGAATCAAGACCATGAAGAAAGGA
EST: gi|211432101|gb|FL195658.1|FL195658
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: gi|211437300|gb|FL195686.1|FL195686
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGTTGGGATCAAGGAAT
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAAT
EST: gi|148961764|gb|EE012538.2|EE012538
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: gi|211434692|gb|FL195661.1|FL195661
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: gi|211429499|gb|FL195642.1|FL195642
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: gi|211432094|gb|FL195651.1|FL195651
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGTTG
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTG
EST: gi|9952051|gb|BE638634.1|BE638634
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: gi|148986243|gb|EE029994.2|EE029994
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: gi|211434706|gb|FL195675.1|FL195675
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGA
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGA
EST: gi|211432102|gb|FL195659.1|FL195659
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: gi|149111770|gb|EE190920.2|EE190920
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: gi|149071261|gb|EE159656.2|EE159656
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: gi|211434704|gb|FL195673.1|FL195673
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGGTGGGATCAAGGAATCAAGACCA
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCA
EST: gi|211434698|gb|FL195667.1|FL195667
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAACAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGA
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAA-AGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGA
EST: gi|211429501|gb|FL195644.1|FL195644
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAANGGTTGGGATCAAGGAATCAAGACCATGAAGAAA
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAA
EST: gi|71767511|gb|DR965448.1|DR965448
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: gi|211429497|gb|FL195640.1|FL195640
EST:     GACTCAAGCCGTGATNCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAG
genomic: GACTCAAGCCGTGAT-CGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAG
EST: gi|211432098|gb|FL195655.1|FL195655
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: gi|211432099|gb|FL195656.1|FL195656
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: gi|211434700|gb|FL195669.1|FL195669
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAG
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAG
EST: gi|211437294|gb|FL195680.1|FL195680
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: gi|211437298|gb|FL195684.1|FL195684
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGTTNGGATCAAGGAATCAAGACCATGAAGAAA
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAA
EST: gi|149081119|gb|EE170223.2|EE170223
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: gi|211434697|gb|FL195666.1|FL195666
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCMAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: gi|5296103|gb|AI782978.1|AI782978
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: gi|148958573|gb|EC904817.2|EC904817
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: gi|149009170|gb|EE041295.2|EE041295
EST:     CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG                         GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgacattgccaagttgaaaaataatgctcattaactattttgtcaatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGAAAATGCTATTTTTACCATTCCTCCAGAGCTGGCTTATGGAGCATCTGG
                              cattaac  putative branch site (score: 2)
                                       ttttgtc  putative PPT
            aagttgaaaaataat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaattctagcttggagatcatcctgtttctctcttgcctctttgttgacattgccaagttgaaaaataatgctcattaactattttgtcaatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGAAAATGCTATTTTTACCATTCCTCCAGAGCTGGCTTATGGAGCATCTGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA