1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagctgttagttcgtttccctgagatttctgcacagcatatttaccagcatgaatgggatgtcattcgtcattgtactgtagtgatttattagattcatcattgtatcagggtagctgagatagcaggagttgatatttgctttctgactgtgcagATAATTGTGATCTATATCGTGGAGAGTGGGTTACTGATTCTTCTGGGCCACTATACACAAACAACTCCTGCCCTATCATCACACAGATGCAGAATTGCCA
species | Zea mays |
transcript | GRMZM2G096169_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AACGATTCCGGACGAGGATACATCTAATGAATCTCAAAAGGCTGAGCAAG ATAATTGTGATCTATATCGTGGAGAGTGGGTTACTGATTCTTCTGGGCCACEST: gi|86467669|gb|DY234039.1|DY234039
genomic: AACGATTCCGGACGAGGATACATCTAATGAATCTCAAAAGGCTGAGCAAGgtgagctgtt ... gactgtgcagATAATTGTGATCTATATCGTGGAGAGTGGGTTACTGATTCTTCTGGGCCAC
EST: AACGATTCCGGACGAGGATACATCTAATGAATCTCAAAAGGCTGAGCAAG ATAATTGTGATCTATATCGTGGAGAGTGGGTTACTGATTCTTCTGGGCCACEST: gi|31612016|gb|CD568638.1|CD568638
genomic: AACGATTCCGGACGAGGATACATCTAATGAATCTCAAAAGGCTGAGCAAGgtgagctgtt ... gactgtgcagATAATTGTGATCTATATCGTGGAGAGTGGGTTACTGATTCTTCTGGGCCAC
EST: AACGATTCCGGACGAGGATACATCTAATGAATCTCAAAAGGCTGAGCAAG ATAATTGTGATCTATATCGTGGAGAGTGGGTTACTGATTCTTCTGGGCCACEST: gi|60354175|gb|DN221148.1|DN221148
genomic: AACGATTCCGGACGAGGATACATCTAATGAATCTCAAAAGGCTGAGCAAGgtgagctgtt ... gactgtgcagATAATTGTGATCTATATCGTGGAGAGTGGGTTACTGATTCTTCTGGGCCAC
EST: AACGATTCCGGACGAGGATACATCTAATGAATCTCAAAAGGCTGAGCAAG ATAATTGTGATCTATATCGTGGAGAGTGGGTTACTGATTCTTCTGGGCCACEST: gi|50337243|gb|CO532369.1|CO532369
genomic: AACGATTCCGGACGAGGATACATCTAATGAATCTCAAAAGGCTGAGCAAGgtgagctgtt ... gactgtgcagATAATTGTGATCTATATCGTGGAGAGTGGGTTACTGATTCTTCTGGGCCAC
EST: AACGATTCCGGACGAGGATACATCTAATGAATCTCAAAAGGCTGAGCAAG ATAATTGTGATCTATATCGTGGAGAGTGGGTTACTGATTCTTCTGGGCCACEST: gi|31558739|gb|CD527951.1|CD527951
genomic: AACGATTCCGGACGAGGATACATCTAATGAATCTCAAAAGGCTGAGCAAGgtgagctgtt ... gactgtgcagATAATTGTGATCTATATCGTGGAGAGTGGGTTACTGATTCTTCTGGGCCAC
EST: AACGATTCCGGACGAGGATACATCTAATGAATCTCAAAAGGCTGAGCAAG ATAATTGTGATCTATATCGTGGAGAGTGGGTTACTGATTCTTCTGGGCCACEST: gi|149071876|gb|EE160264.2|EE160264
genomic: AACGATTCCGGACGAGGATACATCTAATGAATCTCAAAAGGCTGAGCAAGgtgagctgtt ... gactgtgcagATAATTGTGATCTATATCGTGGAGAGTGGGTTACTGATTCTTCTGGGCCAC
EST: AACGATTCCGGACGAGGATACATCTAATGAATCTCAAAAGGCTGAGCAAG ATAATTGTGATCTATATCGTGGAGAGTGGGTTACTGATTCTTCTGGGCCACEST: gi|60350385|gb|DN217358.1|DN217358
genomic: AACGATTCCGGACGAGGATACATCTAATGAATCTCAAAAGGCTGAGCAAGgtgagctgtt ... gactgtgcagATAATTGTGATCTATATCGTGGAGAGTGGGTTACTGATTCTTCTGGGCCAC
EST: AACGATTCCGGACGAGGATACATCTAATGAATCTCAAAAGGCTGAGCAAG ATAATTGTGATCTATATCGTGGAGAGTGGGTTACTGATTCTTCTGGGCCAC
genomic: AACGATTCCGGACGAGGATACATCTAATGAATCTCAAAAGGCTGAGCAAGgtgagctgtt ... gactgtgcagATAATTGTGATCTATATCGTGGAGAGTGGGTTACTGATTCTTCTGGGCCAC
ttgtatcagggtagctgagatagcaggagttgatatttgctttctgactgtgcagATAATTGTGATCTATATCGTGGAGAGTGGGTTACTGATTCTTCTGGGCCACTATACACAAACAACTCCTGCCCTATCATCACACAGATGCAGAATTGCCA
ttctgac putative branch site (score: 2)
ctttctg CT-rich tract
ttgatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctgttagttcgtttccctgagatttctgcacagcatatttaccagcatgaatgggatgtcattcgtcattgtactgtagtgatttattagattcatcattgtatcagggtagctgagatagcaggagttgatatttgctttctgactgtgcagATAATTGTGATCTATATCGTGGAGAGTGGGTTACTGATTCTTCTGGGCCACTATACACAAACAACTCCTGCCCTATCATCACACAGATGCAGAATTGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG