Sequence
atgc intronic sequence ATGC exonic sequencegtattcactattcagtcattttactggaatggatgcaagccacacagtttttgatgtcttgcttttttctgatcatctgtttacttgcactagGATCCACTAAAGTCCATCCATTTCAGCAACTCAAACCCACTGTGCCATGCATTCGACCCAGAGGCCAAAGAGGGACACGACCTGATCATTGGGATGGGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G096070_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os12g07450.1 (Oryza sativa), 3'ss of exon 2
gtattcactattcagtcattttactggaatggatgcaagccacacagtttttgatgtcttgcttttttctgatcatctgtttacttgcactagGATCCACTAAAGTCCATCCATTTCAGCAACTCAAACCCACTGTGCCATGCATTCGACCCAGAGGCCAAAGAGGGACACGACCTGATCATTGGGATGGGAT
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-------gtctgtaccttttataatggtttag-tgtgaa--atgtagtttctagtgt-ttattgtctgctgataagcctgataactgcaccagGATCCAATAAAGTCCATCCATTTCAGCAACTCGAACCCACTATGCCATGCATTCGACCCAGAGGCCAAGGAGGGACATGACCTGATCATTGGTATGGGGT
upper sequence: GRMZM2G096070_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT2G37160.1 (Arabidopsis thaliana), 3'ss of exon 2
gtattcactattc-agtcattttactggaatg-gatgcaagccacacagtttttgatgtcttgcttttttctgatcatctgtttacttgcactagGATCCACTAAAGTCCATCCATTTCAGCAACTCAAACCCACTGTGCCATGCATTCGACCCAGAGGCCAAAGAGGGACACGACCTGATCATTGGGATGGGAT
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gtaatcttacctctactcgttttgttttcttaagatttgatttgatctgctggttgtttgtcacatttatgaga------aattatttgatttagGATCCAGTAAAGTCTATACATATCAGCAATTCAAACCCTATGTGCCATGCATTTCATCCAGATGCTAAGGATGGACATGATCTACTTATTGGGCTGAACT
upper sequence: GRMZM2G096070_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT3G53390.1 (Arabidopsis thaliana), 3'ss of exon 2
--------gtattcactattcagtcattttactggaatggatgcaagccacacagtttttgatgtcttgcttttttc-tgatcatctg-----tttacttgcactagGATCCACTAAAGTCCATCCATTTCAGCAACTCAAACCCACTGTGCCATGCATTCGACCCAGAGGCCAAAGAGGGACACGACCTGATCATTGGGATGGGAT
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gtaatttcttcttttctttgttttccttttagtgatttggctgtaa--tgttctgttttt--tgttttgttttggaagtaatggtttaggaaacttctttgatgtagGATCCAGTAAAGTCTATCCATTTCAGTAATTCAAACCCTATGTGTCATGCTTTTGATCCGGATGCTAAGGATGGGCATGACTTACTTATTGGGCTGAATT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gccacacagtttttgatgtcttgcttttttctgatcatctgtttacttgcactagGATCCACTAAAGTCCATCCATTTCAGCAACTCAAACCCACTGTGCCATGCATTCGACCCAGAGGCCAAAGAGGGACACGACCTGATCATTGGGATGGGAT
ttctgat putative branch site (score: 3)
tttactt putative PPT
tttttgat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtattcactattcagtcattttactggaatggatgcaagccacacagtttttgatgtcttgcttttttctgatcatctgtttacttgcactagGATCCACTAAAGTCCATCCATTTCAGCAACTCAAACCCACTGTGCCATGCATTCGACCCAGAGGCCAAAGAGGGACACGACCTGATCATTGGGATGGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG