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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactcaaataccctccgtttcgctcttttcttagtgcttacgtacctcgtaactggttgcctgcttcttgtgcctctctctctctctctctctccctcttcccgcgtggcgtgcgccgccgtacgggctgtttgctgctactgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACATCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCAT

Basic information

species Zea mays
transcript GRMZM2G095969_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095969_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os07g06440.1 (Oryza sativa), 3'ss of exon 2
gtaactcaaataccctccgtttcgctcttttcttagtgcttacgtacctcgtaactggttgcctgcttcttgtgcctctctctctctctctctc-tccctcttcccgcgtggcgtgcgccgccgtacgggctgtttgctgctactgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACATCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCAT
                             | |  |   | | |   ||||   | |  |  |  | || |   | ||| || |||  ||||| |     ||| |  ||||   |  |   || |         |  | ||| |  |   ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||| || |||||||| ||||||||
----------------------------gtacccacctcctcctctcctcacgattcttatctcgtttttctcggctcactgtctggctctcacgcttttctacttgcgtcttgctctttgctgc--------tgcgatgcgaacgaactgaagATGGCATGTTCAGGGGCATCTACCACGGCAAGCAATGCCACGCCGCCGACATCCCCGCCGTGCTCGCCCGCGCGTGGGCGGCCGGCGTCGACCGCATCAT

upper sequence: GRMZM2G095969_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os08g06880.1 (Oryza sativa), 3'ss of exon 1
gtaactcaaataccctccgtttcgctcttttcttagtgcttacgtacctcgtaactggttgcctgcttcttgtgcctctctctctctctctctctccctcttcccgcgtggcgtgcgccgccgtacgggctgtttgctgctactgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACATCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCAT-
                            |  |    | ||      ||||   |||  |  |  | || | | |  || ||  ||  ||||| | |  ||| | |||||       | || | | |   ||   |||||| |  |   ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||  |||| ||||||||||| || |||||||| |||||||| 
---------------------------gtacccacctcctcctcctcctcccgactcttatctcgtttttcgcgtttcactgcctggctctcacgctttctactcgcgt----cttggcgtcttgct--cttgctgctgcgaacgaactgaagatggcatgttcagGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACATCCCCGCCGTGATCGCCCGCGCGTGGGCGGCCGGCGTCGACCGCATCATC

upper sequence: GRMZM2G095969_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os07g06410.5 (Oryza sativa), 3'ss of exon 1
gtaactcaaataccctccgtttcgctcttttcttagtgcttacgtacctcgtaactggttgcctgcttcttgtgcctctctctctctctctctctccctcttcccgcgtggcgtgcgccgccgtacgggctgtttgctgctactgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACATCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCAT
                                 ||   |   ||   |      | | ||     ||  || | |    ||| || |||  ||||| | |||  |   | ||||    | |  | | | |||   | ||| |  |   ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| || ||| |||| || |||||||| ||||||||
--------------------------------gtataaccgccgcctcctcctcccgattcttatctcgtttttctcggctcactgtctggctctcacgcttttctacttgcgtcttgctctttgctg-ctgc--gatgcgaacgaactgaagATGGCATGTTCAGGGGCATCTACCACGGCAAGCAATGCCACGCCGCCGACATCCCCGCCGTGCTCGCCCGTGCGCGGGCGGCCGGCGTCGACCGCATCAT

upper sequence: GRMZM2G095969_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA19G38780.1 (Glycine max), 3'ss of exon 2
gtaactcaaataccctccgtttcgctcttttcttagtgcttacgtacctcgtaactggttgcct-gcttcttgtgcctctctctctctctctctctccctcttcccgcgtggcgtgcgccgccgtacgggctgtttgctgctactgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACATCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCAT
                                           |  ||   |||       | | | ||    | | ||| | |||||||||||||| ||||                    | | ||     ||| |              |||||||||||| ||||| ||||||||||||||||| || |||| | | || ||  |  | ||  |     | || |||||||| ||||||   || || ||
-----------------------------------------gtgagccatttaatcaaacactttgttttccattcatctat-tctctctctctctctctct--------------------cattcgaaaaatttac--------------agATGGCATGTTTAAGGGAATCTACCACGGCAAGCAATGTCACGTCTCGGATATTGCAACTGTTTTGAACAGAGCTTGGGCTGCCGGCGTCACCCGAATTAT

upper sequence: GRMZM2G095969_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv08s0032g01170.t01 (Vitis vinifera), 3'ss of exon 2
gtaactcaaataccctccgtttcgctcttttcttagtgcttacgtacctcgtaactggttgcctgcttcttgtgcctctctctctctctctctctccctcttcccgcgtggcgtgcgccgccgtacgggctgtttgctgctactgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACATCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCAT
                                                         ||       |||||    | |    |  | |     || |    |   |  |          ||    |   |||     |   |    ||   ||||  |||||||||||| |||||| | ||||||||||||||||   | ||  |  | || ||  |     | || |||  ||| || || ||| | || ||
---------------------------------------------------------gtcaggcatttcttcgaacacatggtggcccatatgcttctctattttgttta--------tgcttctcaatctgcaaatt--caacctctgacagATAACATGTTCAAGGGAATCTACAATGGCAAGCAGTGCCACGTGTCTGATCTTGCAGCAGTGTTGAGCAGAGCTTGGAGTGCTGGTGTTGATAGAATTAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211487334|gb|FL145767.1|FL145767
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGTCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|76936926|gb|DV174965.1|DV174965
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|211481566|gb|FL145739.1|FL145739
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGTCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|211481567|gb|FL145740.1|FL145740
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|211484447|gb|FL145748.1|FL145748
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|211487326|gb|FL145759.1|FL145759
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|211487336|gb|FL145769.1|FL145769
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|211487327|gb|FL145760.1|FL145760
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGTCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|94477631|gb|EB706589.1|EB706589
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|211484455|gb|FL145756.1|FL145756
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGTCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|211484456|gb|FL145757.1|FL145757
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGTCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|211487328|gb|FL145761.1|FL145761
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGTCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|71774366|gb|DR972244.1|DR972244
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|76021692|gb|DT948862.1|DT948862
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|74242558|gb|DT650472.1|DT650472
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|211484454|gb|FL145755.1|FL145755
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACG
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACG
EST: gi|211481564|gb|FL145737.1|FL145737
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|71434563|gb|DR815613.1|DR815613
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|211487335|gb|FL145768.1|FL145768
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGTCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|211484453|gb|FL145754.1|FL145754
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGTCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|211481559|gb|FL145732.1|FL145732
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGTCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|211484445|gb|FL145746.1|FL145746
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGTCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|89251475|gb|DY623261.1|DY623261
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|211481563|gb|FL145736.1|FL145736
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|211484450|gb|FL145751.1|FL145751
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|211481568|gb|FL145741.1|FL145741
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|78108903|gb|DV527320.1|DV527320
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|37421738|gb|CF648570.1|CF648570
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|211484449|gb|FL145750.1|FL145750
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|211487330|gb|FL145763.1|FL145763
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGTCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|37419762|gb|CF647566.1|CF647566
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|211481565|gb|FL145738.1|FL145738
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|211481570|gb|FL145743.1|FL145743
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGTCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|211481560|gb|FL145733.1|FL145733
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|71325561|gb|DR799471.1|DR799471
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|211481561|gb|FL145734.1|FL145734
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGTCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|211487331|gb|FL145764.1|FL145764
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGTCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|211484443|gb|FL145744.1|FL145744
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGTCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
EST: gi|87157799|gb|DY402588.1|DY402588
EST:     ATCGACATCGCAGTCAACTTCACAG                         ATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA
genomic: ATCGACATCGCAGTCAACTTCACAGgtaactcaaa ... tgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttcccgcgtggcgtgcgccgccgtacgggctgtttgctgctactgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACATCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCAT
                                            ctgcctt  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaactcaaataccctccgtttcgctcttttcttagtgcttacgtacctcgtaactggttgcctgcttcttgtgcctctctctctctctctctctccctcttcccgcgtggcgtgcgccgccgtacgggctgtttgctgctactgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACATCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG