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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtgatttactttgccgtgctggaaatgttttgtttctttgtctgtttatgggaaaattttgattttgcctttttatggttgtttgttagGAAGAGGAGGAGGAGAGGGCGCACAGATGGAGGGACTTCTTGGACAGGTTGGCTGAGTCAGCGAATGTGCCCACCACACCCAGTGTTTCTCCATATGCAG

Basic information

species Zea mays
transcript GRMZM2G095868_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095868_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g17540.3 (Oryza sativa), 3'ss of exon 2
gtagtgatttactttg-------ccgtgctggaaatgttttgtttctttgtctgtttatgggaaaattttgat------tttgcc-tttttatggttgtt--------tgttagGAAGAGGAGGAGGAGAGGGCGCACAGATGGAGGGACTTCTTGGACAGGTTGGCTGAGTCAGCGAATGTGCCCACCACACCCAGTGTTTCTCCATATGCAG---
   || ||||||   |         |   ||||||||  ||||||  |||| |||||  ||  || |||||||      | | |  ||||| ||| ||||        | | ||||||| || |||||||| ||| ||||||||| |||||||||||||||||||||||| || ||  |||    || |||| ||||  |||| || |    ||   
---gtaatttaccaggggcagagtagaaatggaaatgcgttgttt--ttgtttgtttcaggttaagttttgatacatactgtactatttttttggctgttgtttggtttatcagGAAGAAGAAGAGGAGAGAGCGGACAGATGGAAGGACTTCTTGGACAGGTTGGCTGAATCTGCAGATGA---CATCACAACCAGCATTTCACCTTCCAAAGAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttgtctgtttatgggaaaattttgattttgcctttttatggttgtttgttagGAAGAGGAGGAGGAGAGGGCGCACAGATGGAGGGACTTCTTGGACAGGTTGGCTGAGTCAGCGAATGTGCCCACCACACCCAGTGTTTCTCCATATGCAG
                      ttttgat  putative branch site (score: 4)
                  aaaattttgatttt  TA-rich tract