1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...taattagttaatactgcttcacctttcgcatgcacatcccttaggtttcacgagtagtgtaattttgcagcctaacatgattctcaccattatatctcagGTTGGCAGTATCAACCATCAATTCCAACAATACAATATTTTCTAGAGGATGCGCTGATATGCATCACTAAGCTGGATCGGAAGAAACTATGCTTAGTCGG
species | Zea mays |
transcript | GRMZM2G095782_T05 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CATGCACAAGTGGAGGATGGTCATCGCCTACGATGGAACAAAGTTCAAAG GTTGGCAGTATCAACCATCAATTCCAACAATACAATATTTTCTAGAGGATGEST: gi|211213555|gb|FL114043.1|FL114043
genomic: CATGCACAAGTGGAGGATGGTCATCGCCTACGATGGAACAAAGTTCAAAGgtttgatttg ... tatatctcagGTTGGCAGTATCAACCATCAATTCCAACAATACAATATTTTCTAGAGGATG
EST: CATGCACAAGTGGAGGATGGTCATCGCCTACGATGGAACAAAGTTCAAAG GTTGGCAGTATCAACCATCAATTCCAACAATACAATATTTTCTAGAGGATGEST: gi|71317330|gb|DR795358.1|DR795358
genomic: CATGCACAAGTGGAGGATGGTCATCGCCTACGATGGAACAAAGTTCAAAGgtttgatttg ... tatatctcagGTTGGCAGTATCAACCATCAATTCCAACAATACAATATTTTCTAGAGGATG
EST: CATGCACAAGTGGAGGATGGTCATCGCCTACGATGGAACAAAGTTCAAAG GTTGGCAGTATCAACCATCAATTCCAACAATACAATATTTTCTAGAGGATGEST: gi|211213558|gb|FL114046.1|FL114046
genomic: CATGCACAAGTGGAGGATGGTCATCGCCTACGATGGAACAAAGTTCAAAGgtttgatttg ... tatatctcagGTTGGCAGTATCAACCATCAATTCCAACAATACAATATTTTCTAGAGGATG
EST: CATGCACAAGTGGAGGATGGTCATCGCCTACGATGGAACAAAGTTCAAAG GTTGGCAGTATCAACCATCAATTCCAACAATACAATATTTTCTAGAGGATGEST: gi|211213554|gb|FL114042.1|FL114042
genomic: CATGCACAAGTGGAGGATGGTCATCGCCTACGATGGAACAAAGTTCAAAGgtttgatttg ... tatatctcagGTTGGCAGTATCAACCATCAATTCCAACAATACAATATTTTCTAGAGGATG
EST: CATGCACAAGTGGAGGATGGTCATCGCCTACGATGGAACAAAGTTCAAAG GTTGGCAGTATCAACCATCAATTCCAACAATACAATATTTTCTAGAGGATGEST: gi|37423784|gb|CF649621.1|CF649621
genomic: CATGCACAAGTGGAGGATGGTCATCGCCTACGATGGAACAAAGTTCAAAGgtttgatttg ... tatatctcagGTTGGCAGTATCAACCATCAATTCCAACAATACAATATTTTCTAGAGGATG
EST: CATGCACAAGTGGAGGATGGTCATCGCCTACGATGGAACAAAGTTCAAAG GGTGGCAGTATCAACCATCAATTCCAACAATACAATATTTTCTAGAGGATGEST: gi|101391179|gb|EB817523.1|EB817523
genomic: CATGCACAAGTGGAGGATGGTCATCGCCTACGATGGAACAAAGTTCAAAGgtttgatttg ... tatatctcagGTTGGCAGTATCAACCATCAATTCCAACAATACAATATTTTCTAGAGGATG
EST: CATGCACAAGTGGAGGATGGTCATCGCCTACGATGGAACAAAGTTCCAAG GTTGGCAGTATCAACCATCAATTCCCAACAATACAATATTTTCTAGAGGA
genomic: CATGCACAAGTGGAGGATGGTCATCGCCTACGATGGAACAAAGTTCAAAGgtttgatttg ... tatatctcagGTTGGCAGTATCAACCATCAATTCC-AACAATACAATATTTTCTAGAGGA
tttcacgagtagtgtaattttgcagcctaacatgattctcaccattatatctcagGTTGGCAGTATCAACCATCAATTCCAACAATACAATATTTTCTAGAGGATGCGCTGATATGCATCACTAAGCTGGATCGGAAGAAACTATGCTTAGTCGG
ttctcac putative branch site (score: 2)
tgtaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taattagttaatactgcttcacctttcgcatgcacatcccttaggtttcacgagtagtgtaattttgcagcctaacatgattctcaccattatatctcagGTTGGCAGTATCAACCATCAATTCCAACAATACAATATTTTCTAGAGGATGCGCTGATATGCATCACTAAGCTGGATCGGAAGAAACTATGCTTAGTCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA