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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagttggaattgcgatgtttgtttgcttcacagcctttttccttctaaagttttgctctgacgaggtctacttatccttttgctctatatttagCTCGGACCTGCGGATCAGTTGGATTCTCAAGGGAGACGGTGGTTTCTGATTTCCTTTCTCTAAGCATACCAAATCCTTTGTCTC

Basic information

species Zea mays
transcript GRMZM2G095727_T04
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67028242|gb|CO456991.1|CO456991
EST:     GTTTCCAAGAGTGGACCGGCTCGGAGGCGCTGCTGTTACCTTGGGTGGAG                         CTCGGACCTGCGGATCAGTGGGGTTCTCAAGGGAGACGGTGGTTTCTGATT
genomic: GTTTCCAAGAGTGGACCGGCTCGCAGGCGCTGCTGTTACCTTGGGTGGAGgcaagttgga ... ctatatttagCTCGGACCTGCGGATCAGTTGGATTCTCAAGGGAGACGGTGGTTTCTGATT
EST: gi|78086698|gb|DV515091.1|DV515091
EST:     GTTTCCAAGAGTGGACCGGCTCGCAGGCGCTGCTGTTACCTTGGGTGGAG                         CTCGGACCTGCGGATCAGTTGGATTCTCAAGGGAGACGGTGGTTTCTGATT
genomic: GTTTCCAAGAGTGGACCGGCTCGCAGGCGCTGCTGTTACCTTGGGTGGAGgcaagttgga ... ctatatttagCTCGGACCTGCGGATCAGTTGGATTCTCAAGGGAGACGGTGGTTTCTGATT
EST: gi|71432179|gb|DR813229.1|DR813229
EST:     GTTTCCAAGAGTGGACCGGCTCGCAGGCGCTGCTGTTACCTTGGGTGGAG                         CTCGGACCTGCGGATCAGTTGGATTCTCAAGGGAGACGGTGGTTTCTGATT
genomic: GTTTCCAAGAGTGGACCGGCTCGCAGGCGCTGCTGTTACCTTGGGTGGAGgcaagttgga ... ctatatttagCTCGGACCTGCGGATCAGTTGGATTCTCAAGGGAGACGGTGGTTTCTGATT
EST: gi|31441071|gb|CD510502.1|CD510502
EST:     GTTTCCAAGAGTGGACCGGCTCGCAGGCGCTGCTGTTACCTTGGGTGGAG                         CTCGGACCTGCGGATCAGTTGGATTCTCAAGGGAGACGGTGGTTTCTGATT
genomic: GTTTCCAAGAGTGGACCGGCTCGCAGGCGCTGCTGTTACCTTGGGTGGAGgcaagttgga ... ctatatttagCTCGGACCTGCGGATCAGTTGGATTCTCAAGGGAGACGGTGGTTTCTGATT
EST: gi|89252032|gb|DY623818.1|DY623818
EST:     GTTTCCAAGAGTGGACCGGCTCGCAGGCGCTGCTGTTACCTTGGGTGGAG                         CTCGGACCTGCGGATCAGTTGGATTCTCAAGGGAGACGGTGGTTTCTGATT
genomic: GTTTCCAAGAGTGGACCGGCTCGCAGGCGCTGCTGTTACCTTGGGTGGAGgcaagttgga ... ctatatttagCTCGGACCTGCGGATCAGTTGGATTCTCAAGGGAGACGGTGGTTTCTGATT
EST: gi|94478976|gb|EB707934.1|EB707934
EST:     GTTTCCAAGAGTGGACCGGCTCGCAGGCGCTGCTGTTACCTTGGGTGGAG                         CTCGGACCTGCGGATCAGTTGGATTCTCAAGGGAGACGGTGGTTTCTGATT
genomic: GTTTCCAAGAGTGGACCGGCTCGCAGGCGCTGCTGTTACCTTGGGTGGAGgcaagttgga ... ctatatttagCTCGGACCTGCGGATCAGTTGGATTCTCAAGGGAGACGGTGGTTTCTGATT
EST: gi|211378749|gb|FL130659.1|FL130659
EST:     GTTTCCAAGAGTGGACCGGCTCGGAGGCGCTGCTGTTACCTTGGGTGGAG                         CTCGGACCTGCGGATCAGTGGGATTCTCAAGGGAGACGGTGGTTTCTGATT
genomic: GTTTCCAAGAGTGGACCGGCTCGCAGGCGCTGCTGTTACCTTGGGTGGAGgcaagttgga ... ctatatttagCTCGGACCTGCGGATCAGTTGGATTCTCAAGGGAGACGGTGGTTTCTGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccttctaaagttttgctctgacgaggtctacttatccttttgctctatatttagCTCGGACCTGCGGATCAGTTGGATTCTCAAGGGAGACGGTGGTTTCTGATTTCCTTTCTCTAAGCATACCAAATCCTTTGTCTC
                               cttatccttttgctct  CT-rich tract
                                            tctatattta  TA-rich tract