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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttccgatcctgttatgggtcgttcactgaatttccagccatttctgctgcttgtgcttactgttttggtgtgcttgttgattatatgtggattgcattgtgcagGATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAG

Basic information

species Zea mays
transcript GRMZM2G095348_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095348_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os06g05180.1 (Oryza sativa), 3'ss of exon 3
gtaagttccgatcctgttatgggtcgttcactgaatttccagcc-atttctgctgcttgtgcttactgttttggtgtgcttg---ttgattatatgtggatt-----------gcattg-tgcagGATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAG
| ||||  |   | | || || |   || |    ||||    |  ||||  || | | || || ||  ||||| |||||||    || ||||| ||   |||           |||||| || ||||||||||||||||| ||||| ||||| || ||||||||||| |||||  | |||
gcaagtgacctgcat-ttctgagggttttagcacattttagcctgatttgagccgttcgtact-accattttgatgtgcttttgcttcattatttgattattaagctgtttttgcattggtgtagGATCCTGTCGAGTCTTTACTCCGGGAGCGTGTGCATCTGGGACTATCAGTCGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18654807|gb|BM499612.1|BM499612
EST:     CAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCACGGAGCCATG                         GATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGC
genomic: CAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCACGGAGCCATGgtaagttccg ... cattgtgcagGATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGC
EST: gi|18655044|gb|BM499849.1|BM499849
EST:     CAACGGTCGGAGAGGGTCAAGTCGG-GGA-TTGCACCCCACGGAGCCATG                         GATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGC
genomic: CAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCACGGAGCCATGgtaagttccg ... cattgtgcagGATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGC
EST: gi|18662028|gb|BM501705.1|BM501705
EST:     AACGGTCGGAGAGGGTCATAGTCGGTGGA-TTGCACCCCACGGAGCCATG                         GTATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAG
genomic: AACGGTCGGAGAGGGTCA-AGTCGGTGGATTTGCACCCCACGGAGCCATGgtaagttccg ... cattgtgcagG-ATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAG
EST: gi|18654986|gb|BM499791.1|BM499791
EST:     CAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCACGGAGCCATG                         GATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGC
genomic: CAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCACGGAGCCATGgtaagttccg ... cattgtgcagGATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGC
EST: gi|22489991|gb|BU049914.1|BU049914
EST:     CAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCNCCCCACGGAGCCATG                         GATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGC
genomic: CAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCACGGAGCCATGgtaagttccg ... cattgtgcagGATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGC
EST: gi|18655016|gb|BM499821.1|BM499821
EST:     CAACGG-CGGAGAGGG-CAAGTCGGTGGA-TTGCACCCCACGGAGCCATG                         GATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGC
genomic: CAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCACGGAGCCATGgtaagttccg ... cattgtgcagGATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGC
EST: gi|18655043|gb|BM499848.1|BM499848
EST:     TCGGTGGATTTGCACCCCACGG-GCCATG                         GATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGC
genomic: TCGGTGGATTTGCACCCCACGGAGCCATGgtaagttccg ... cattgtgcagGATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGC
EST: gi|18655015|gb|BM499820.1|BM499820
EST:     ACGGCTCGGTGTAGGGTCAAGTCGGTGGATTTGCACCCCACGGAGCCATG                         GATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGC
genomic: ACGG-TCGGAG-AGGGTCAAGTCGGTGGATTTGCACCCCACGGAGCCATGgtaagttccg ... cattgtgcagGATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGC
EST: gi|18649626|gb|BM498445.1|BM498445
EST:     CAACGGTCGGAGAGGGTCAAGTCGG-GGA-TTGCACCCCACGGAGCCATG                         GATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGC
genomic: CAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCACGGAGCCATGgtaagttccg ... cattgtgcagGATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGC
EST: gi|22489999|gb|BU049922.1|BU049922
EST:     AACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCACGGGAGCCATG                         GATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAG
genomic: AACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCAC-GGAGCCATGgtaagttccg ... cattgtgcagGATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAG
EST: gi|89106409|gb|DY576626.1|DY576626
EST:     CAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCACGGAGCCATG                         GATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGC
genomic: CAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCACGGAGCCATGgtaagttccg ... cattgtgcagGATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGC
EST: gi|18661996|gb|BM501688.1|BM501688
EST:     GATTTGCACCCCACGGAGCCATG                         GATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGC
genomic: GATTTGCACCCCACGGAGCCATGgtaagttccg ... cattgtgcagGATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgtgcttactgttttggtgtgcttgttgattatatgtggattgcattgtgcagGATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAG
                           ttgattatat  TA-rich tract