1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
gtgcgcctgcccgtcctcactggatctcggtttccaagttgtccttctactactgttcttatcgctttgattttgctctgattttagtttgattttgtttctttggtggtgattagCGGAAGTTCGCTCAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCACGGAGCCATG
species | Zea mays |
transcript | GRMZM2G095348_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TATGCCGCTCAGGTTGGAGATCAAG CGAAAGTTCGCTCAACGGTCGGAGAGGGTCAAGTCGGGGGATTTGCCCCCCEST: gi|18654986|gb|BM499791.1|BM499791
genomic: CATGCCGCTCAGGTTGGAGATCAAGgtgcgcctgc ... tggtgattagCGGAAGTTCGCTCAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCC
EST: TGCCGCTCAGGTTGGAGATCAAG CGGAAGTTCGCTCAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCEST: gi|22489991|gb|BU049914.1|BU049914
genomic: TGCCGCTCAGGTTGGAGATCAAGgtgcgcctgc ... tggtgattagCGGAAGTTCGCTCAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCC
EST: ATGCCGCTCAGGTTGGAGATCAAG CGGAAGTTCGCTCAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCNCCCCEST: gi|18655044|gb|BM499849.1|BM499849
genomic: ATGCCGCTCAGGTTGGAGATCAAGgtgcgcctgc ... tggtgattagCGGAAGTTCGCTCAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCC
EST: TGCCGCTCAGG-TGGAGA-CAAG CGGAAGTTCGCTCAACGGTCGGAGAGGGTCAAGTCGG-GGA-TTGCACCCCEST: gi|18655016|gb|BM499821.1|BM499821
genomic: TGCCGCTCAGGTTGGAGATCAAGgtgcgcctgc ... tggtgattagCGGAAGTTCGCTCAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCC
EST: TGCCGCTCAGG-TGGAGATCAAG CGGAAG-TCGCTCAACGG-CGGAGAGGG-CAAGTCGGTGGA-TTGCACCCCEST: gi|89106409|gb|DY576626.1|DY576626
genomic: TGCCGCTCAGGTTGGAGATCAAGgtgcgcctgc ... tggtgattagCGGAAGTTCGCTCAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCC
EST: TGCCGCTCAGGTTGGAGATCAAG CGGAAGTTCGCTCAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCEST: gi|18654807|gb|BM499612.1|BM499612
genomic: TGCCGCTCAGGTTGGAGATCAAGgtgcgcctgc ... tggtgattagCGGAAGTTCGCTCAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCC
EST: TGCCGCTCAGGGTTGGAGATCAAG CGGAAGTTCGCTCAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCEST: gi|22489999|gb|BU049922.1|BU049922
genomic: TGCCGCTCAGG-TTGGAGATCAAGgtgcgcctgc ... tggtgattagCGGAAGTTCGCTCAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCC
EST: TGCCGCTCAGGTTGGAGATCAAG CGGAAGTTCGCTCAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCEST: gi|18649626|gb|BM498445.1|BM498445
genomic: TGCCGCTCAGGTTGGAGATCAAGgtgcgcctgc ... tggtgattagCGGAAGTTCGCTCAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCC
EST: ATGCCGCTCAGG-TGGAGATCAAG CGGAAGTTCGCTCAACGGTCGGAGAGGGTCAAGTCGG-GGA-TTGCACCCC
genomic: ATGCCGCTCAGGTTGGAGATCAAGgtgcgcctgc ... tggtgattagCGGAAGTTCGCTCAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCC
tcgctttgattttgctctgattttagtttgattttgtttctttggtggtgattagCGGAAGTTCGCTCAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCACGGAGCCATG
attttagtttgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgcctgcccgtcctcactggatctcggtttccaagttgtccttctactactgttcttatcgctttgattttgctctgattttagtttgattttgtttctttggtggtgattagCGGAAGTTCGCTCAACGGTCGGAGAGGGTCAAGTCGGTGGATTTGCACCCCACGGAGCCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA