1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcatgatcttctatgtcatatgatatagtgaccttgagatcggggagcttgcccgggtaagtaatgcattcgatcaccctcccttcgttccctttcccagGCTCAACACACTAATCATAGGACGGACGGATGTAGCTCGCCATAACCAACAATGGCGGTGGCGCGGGTGGTTGATGCATGAACGAAGACCGGAAAAGAAT
species | Zea mays |
transcript | GRMZM2G095255_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
agcttgcccgggtaagtaatgcattcgatcaccctcccttcgttccctttcccagGCTCAACACACTAATCATAGGACGGACGGATGTAGCTCGCCATAACCAACAATGGCGGTGGCGCGGGTGGTTGATGCATGAACGAAGACCGGAAAAGAAT
ttcgatcaccctccct CT-rich tract
taagtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatgatcttctatgtcatatgatatagtgaccttgagatcggggagcttgcccgggtaagtaatgcattcgatcaccctcccttcgttccctttcccagGCTCAACACACTAATCATAGGACGGACGGATGTAGCTCGCCATAACCAACAATGGCGGTGGCGCGGGTGGTTGATGCATGAACGAAGACCGGAAAAGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
-catgatc
- - - - - - - - - - - - - - - - - - - - - - -agcttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcattc