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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtagccatatacgtatggtatggatactatatcactatgagcagttgacgtgcacaactcatcaaggcccccagatggggtgagaccgccagcagcagtgtcgttcgttcgtccgtgcgttctgccgaatgcttttggttgtttgaagttcgtaattgtttgctcggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCATGGCAGCAACTCCTCCTATCCCTGGCACCCGCAGTGCCGCCAGGCCGCC

Basic information

species Zea mays
transcript GRMZM2G095141_T05
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148941574|gb|EC886510.2|EC886510
EST:     CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
EST: gi|211512679|gb|FL346133.1|FL346133
EST:     CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCCTGCAACAATGGCAGCCCTCAGATGGCATTCCATCA
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
EST: gi|148951196|gb|EC896884.2|EC896884
EST:     CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
EST: gi|78075611|gb|DV504045.1|DV504045
EST:     CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
EST: gi|71447021|gb|DR828071.1|DR828071
EST:     CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
EST: gi|148959199|gb|EE010648.2|EE010648
EST:     CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
EST: gi|211386581|gb|FL357085.1|FL357085
EST:     CTGGGCGCTCGGAGGCCACCGGCAG-CGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCCTGCAACAATGGCAGCCCTCAGATGGCATTCCATCA
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
EST: gi|211347508|gb|FL349165.1|FL349165
EST:     CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCC
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCC
EST: gi|211335900|gb|FL358434.1|FL358434
EST:     CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
EST: gi|211310888|gb|FL144806.1|FL144806
EST:     CTGGGCGCTCGGAGGCCACCGGCAG-CGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCCTGCAACA
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCCTGCAACA
EST: gi|149081591|gb|EE170732.2|EE170732
EST:     CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
EST: gi|149100624|gb|EE186712.2|EE186712
EST:     CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
EST: gi|78078033|gb|DV506448.1|DV506448
EST:     CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
EST: gi|71301051|gb|DR786555.1|DR786555
EST:     CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
EST: gi|148951347|gb|EC897061.2|EC897061
EST:     CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
EST: gi|91872713|gb|EB402670.1|EB402670
EST:     CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
EST: gi|149076596|gb|EE165231.2|EE165231
EST:     CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgccgaatgcttttggttgtttgaagttcgtaattgtttgctcggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCATGGCAGCAACTCCTCCTATCCCTGGCACCCGCAGTGCCGCCAGGCCGCC
                                       tttgctc  CT-rich tract
                                 taattgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtgtagccatatacgtatggtatggatactatatcactatgagcagttgacgtgcacaactcatcaaggcccccagatggggtgagaccgccagcagcagtgtcgttcgttcgtccgtgcgttctgccgaatgcttttggttgtttgaagttcgtaattgtttgctcggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCATGGCAGCAACTCCTCCTATCCCTGGCACCCGCAGTGCCGCCAGGCCGCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC