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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatgagtttggggatttgctatgaaccttctaattccccttctgtttttttattagttggattggagatggatttgacgctcctgttcctattctgatctctgcagGAAGGGAAGCCCCTAGTGCTGAACGTGGTCAGGCGCGCCGAGCAAATGTTGATCAATAATCC

Basic information

species Zea mays
transcript GRMZM2G094712_T04
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094712_T04 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g55540.2 (Oryza sativa), 3'ss of exon 2
gtaagatgagtttggggatttgctatgaaccttctaattccccttctgtttttttattagttggattggagatggatttgacgctcctgttcctattctgatctctgcagGAAGGGAAGCCCCTAGTGCTGAACGTGGTCAGGCGCGCCGAGCAAATGTTGATCAATAATCC
||||| ||  || ||||| || ||||  |  || |     | | |  || ||||      ||||||||| | ||||||||||  ||   ||  |  |||||||   | |||||||||||||||| |||||||| |||||||||||||| ||||| ||| ||||||| || ||
gtaaggtgttttgggggaatttctattgattttttg----ctccttcgtattttgg---attggattggtggtggatttgac-ttcgattttgtggtctgatcggagtaggaagggaagCCCCTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18385028|gb|BM418227.1|BM418227
EST:     ATCCCAGCCCCATGAAGGTCAACCTCGGGGTTGGCGCCTACCGGACCGAG                         GAAGGGAAGCCCCTAGTGCTGAACGTGGTCAGGCGCGCCGAGCAAATGTTG
genomic: ATCCCAGCCCCGTGAAGGTCAACCTCGGGGTCGGCGCCTACCGGACCGAGgtaagatgag ... atctctgcagGAAGGGAAGCCCCTAGTGCTGAACGTGGTCAGGCGCGCCGAGCAAATGTTG
EST: gi|211351968|gb|FL217074.1|FL217074
EST:     ATCCCAGCCCCGTGAAGGTCAACCTCGGGGTCGGCGCCTACCGGACCGAG                         GAAGGGAAGCCCCTAGTGCTGAACGTGGTCAGGCGCGCCGAGCAAATGTTG
genomic: ATCCCAGCCCCGTGAAGGTCAACCTCGGGGTCGGCGCCTACCGGACCGAGgtaagatgag ... atctctgcagGAAGGGAAGCCCCTAGTGCTGAACGTGGTCAGGCGCGCCGAGCAAATGTTG
EST: gi|16137337|gb|BI894202.1|BI894202
EST:     ATCCCAGCCCCATGAAGGTCAACCTCGGGGTTGGCGCCTACCGGACCGAG                         GAAGGGAAGCCCCTAGTGCTGA
genomic: ATCCCAGCCCCGTGAAGGTCAACCTCGGGGTCGGCGCCTACCGGACCGAGgtaagatgag ... atctctgcagGAAGGGAAGCCCCTAGTGCTGA
EST: gi|61119383|gb|DN560344.1|DN560344
EST:     ATCCCAGCCCCGTGAAGGTCAACCTCGGGGTCGGCGCCTACCGGACCGAG                         GAAGGGAAGCCCCTAGTGCTGAACGTGGTCAGGCGCGCCGAGCAAATGTTG
genomic: ATCCCAGCCCCGTGAAGGTCAACCTCGGGGTCGGCGCCTACCGGACCGAGgtaagatgag ... atctctgcagGAAGGGAAGCCCCTAGTGCTGAACGTGGTCAGGCGCGCCGAGCAAATGTTG
EST: gi|18385008|gb|BM418207.1|BM418207
EST:     ATCCCAGCCCCATGAAGGTCAACCTCGGGGTTGGCGCCTACCGGACCGAG                         GAAGGGAAGCCCCTAGTGCTGAACGTGGTCAGGCGCGCCGAGCAAATGTTG
genomic: ATCCCAGCCCCGTGAAGGTCAACCTCGGGGTCGGCGCCTACCGGACCGAGgtaagatgag ... atctctgcagGAAGGGAAGCCCCTAGTGCTGAACGTGGTCAGGCGCGCCGAGCAAATGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attagttggattggagatggatttgacgctcctgttcctattctgatctctgcagGAAGGGAAGCCCCTAGTGCTGAACGTGGTCAGGCGCGCCGAGCAAATGTTGATCAATAATCC
                                        ttctgat  putative branch site (score: 3)
                                              tctctgc  CT-rich tract