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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cggagggagtatgatttaaagtagaaggttctaaataagttagataagtatgtctttttcagttaaagttggccattaactttgatcttgaaacttgcagCAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGACACCCATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTG

Basic information

species Zea mays
transcript GRMZM2G094255_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094255_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os04g52710.3 (Oryza sativa), 3'ss of exon 2
-cggagggagtatgatttaaagtagaaggttctaaataagttagataagtatgtctttttcagttaaagttggccattaactttgatcttgaaacttgcagCAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGACACCCATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTG
  | |     |    ||  | |||  ||  | || | | | |  |||| |||| || ||| ||| |||  |||||||||| | ||    |  ||||| |||||  ||||||| ||||| |||||||| || |  ||||| ||||  || ||||| || || ||||| ||||||||||| || ||||| |||||||||||||
ttgtatatgtttctcttgtaggtaccagtctttacacatgctgcataaatatg-ctcttttagtcaaatctggccattaattctgtgtctataacttacagCAACTGGCATCTCATGGGCTCTTTGACGTATGTGTTAAGGCAAAGGGTGACACTCACATCGATGACCATCACTCAAACGAAGACATCGCTTTGGCAATTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76281018|gb|DV020586.1|DV020586
EST:     GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGAT                         CAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGAC
genomic: GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGATgtgagtagtt ... aaacttgcagCAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGAC
EST: gi|211006666|gb|FL081503.1|FL081503
EST:     GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGAT                         CAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGAC
genomic: GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGATgtgagtagtt ... aaacttgcagCAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGAC
EST: gi|211006657|gb|FL081494.1|FL081494
EST:     GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGAT                         CAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGAC
genomic: GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGATgtgagtagtt ... aaacttgcagCAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGAC
EST: gi|211003886|gb|FL081493.1|FL081493
EST:     GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGAT                         CAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGAC
genomic: GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGATgtgagtagtt ... aaacttgcagCAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGAC
EST: gi|149110134|gb|EE293952.2|EE293952
EST:     GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGAT                         CAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGAC
genomic: GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGATgtgagtagtt ... aaacttgcagCAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGAC
EST: gi|88757021|gb|DY541162.1|DY541162
EST:     GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGAT                         CAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGAC
genomic: GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGATgtgagtagtt ... aaacttgcagCAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGAC
EST: gi|211006669|gb|FL081506.1|FL081506
EST:     GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGAT                         CAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGAC
genomic: GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGATgtgagtagtt ... aaacttgcagCAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGAC
EST: gi|211006664|gb|FL081501.1|FL081501
EST:     GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGAT                         CAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGAC
genomic: GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGATgtgagtagtt ... aaacttgcagCAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGAC
EST: gi|91056439|gb|EB166857.1|EB166857
EST:     GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGAT                         CAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGAC
genomic: GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGATgtgagtagtt ... aaacttgcagCAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGAC
EST: gi|31611949|gb|CD568571.1|CD568571
EST:     GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGAT                         CAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGAC
genomic: GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGATgtgagtagtt ... aaacttgcagCAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGAC
EST: gi|211006668|gb|FL081505.1|FL081505
EST:     GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGAT                         CAGTTGGCATCACATGGACTCTTTGATGTCTAC
genomic: GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGATgtgagtagtt ... aaacttgcagCAGTTGGCATCACATGGACTCTTTGATGTCTAC
EST: gi|211006671|gb|FL081508.1|FL081508
EST:     GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGAT                         CAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGAC
genomic: GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGATgtgagtagtt ... aaacttgcagCAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGAC
EST: gi|211006662|gb|FL081499.1|FL081499
EST:     GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGAT                         CAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGAC
genomic: GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGATgtgagtagtt ... aaacttgcagCAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGAC
EST: gi|101397352|gb|EB820599.1|EB820599
EST:     GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGAT                         CAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGAC
genomic: GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGATgtgagtagtt ... aaacttgcagCAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGAC
EST: gi|50325237|gb|CO520363.1|CO520363
EST:     GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGAT                         CAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGAC
genomic: GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGATgtgagtagtt ... aaacttgcagCAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGAC
EST: gi|50323498|gb|CO518624.1|CO518624
EST:     GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGAT                         CAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGAC
genomic: GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGATgtgagtagtt ... aaacttgcagCAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGAC
EST: gi|71309481|gb|DR791027.1|DR791027
EST:     GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGAT                         CAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGAC
genomic: GTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGATgtgagtagtt ... aaacttgcagCAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtatgtctttttcagttaaagttggccattaactttgatcttgaaacttgcagCAGTTGGCATCACATGGACTCTTTGATGTCTACGTTAAAGCAATAGGCGACACCCATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTG
                             attaacttt  TA-rich tract